Analysis of interatomic Contacts of Structural Units in PDB entry:
6GVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GVY entry

There are 3 chains in PDB entry 6GVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 475
B
 C 916 G 920
C
 U 904 G 910
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6GVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
67 90Right-handed alpha
Helix 4
AA4
A
97 104Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
127 131Right-handed alpha
Helix 7
AA7
A
140 152Right-handed alpha
Helix 8
AA8
A
170 175Right-handed alpha
Helix 9
AA9
A
185 206Right-handed alpha
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
249 261Right-handed alpha
Helix 12
AB3
A
262 266Right-handed 310
Helix 13
AB4
A
269 277Right-handed alpha
Helix 14
AB5
A
302 323Right-handed alpha
Helix 15
AB6
A
327 331Right-handed 310
Helix 16
AB7
A
349 359Right-handed alpha
Helix 17
AB8
A
379 382Right-handed 310
Helix 18
AB9
A
404 413Right-handed alpha
Helix 19
AC1
A
419 432Right-handed alpha
Helix 20
AC2
A
435 444Right-handed alpha
Helix 21
AC3
A
445 447Right-handed 310
Helix 22
AC4
A
454 466Right-handed alpha
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There are 7 sheets in PDB entry 6GVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
280 293anti-parallel
Strand 3
A
8 13anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
280 293anti-parallel
Strand 3
A
159 163parallel
Strand 4
A
180 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
414 415anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
167 169anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
138 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
364 366anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
388 393anti-parallel
Strand 3
A
398 402anti-parallel
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