Analysis of interatomic Contacts of Structural Units in PDB entry:
6GW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GW6 entry

There are 6 chains in PDB entry 6GW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 145
B
 MET 1LEU 149
C
 MET 1LEU 149
D
 MET 1PHE 145
E
 MET 1LEU 149
F
 MET 1LEU 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6GW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed 310
Helix 2
AA2
A
37 49Right-handed alpha
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
82 85Right-handed 310
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
125 131Right-handed 310
Helix 7
AA7
B
2 6Right-handed alpha
Helix 8
AA8
B
6 23Right-handed alpha
Helix 9
AA9
B
29 40Right-handed alpha
Helix 10
AB1
B
42 52Right-handed alpha
Helix 11
AB2
B
56 64Right-handed alpha
Helix 12
AB3
B
65 75Right-handed alpha
Helix 13
AB4
B
80 102Right-handed alpha
Helix 14
AB5
B
103 112Right-handed alpha
Helix 15
AB6
B
123 128Right-handed 310
Helix 16
AB7
B
129 146Right-handed alpha
Helix 17
AB8
C
8 22Right-handed alpha
Helix 18
AB9
C
29 40Right-handed alpha
Helix 19
AC1
C
42 52Right-handed alpha
Helix 20
AC2
C
56 64Right-handed alpha
Helix 21
AC3
C
65 75Right-handed alpha
Helix 22
AC4
C
80 102Right-handed alpha
Helix 23
AC5
C
103 113Right-handed alpha
Helix 24
AC6
C
115 119Right-handed 310
Helix 25
AC7
C
122 127Right-handed alpha
Helix 26
AC8
C
129 146Right-handed alpha
Helix 27
AC9
D
14 19Right-handed 310
Helix 28
AD1
D
37 49Right-handed alpha
Helix 29
AD2
D
52 56Right-handed 310
Helix 30
AD3
D
82 85Right-handed 310
Helix 31
AD4
D
86 101Right-handed alpha
Helix 32
AD5
D
125 131Right-handed 310
Helix 33
AD6
E
9 23Right-handed alpha
Helix 34
AD7
E
29 40Right-handed alpha
Helix 35
AD8
E
43 53Right-handed alpha
Helix 36
AD9
E
56 64Right-handed alpha
Helix 37
AE1
E
65 76Right-handed alpha
Helix 38
AE2
E
80 102Right-handed alpha
Helix 39
AE3
E
103 112Right-handed alpha
Helix 40
AE4
E
123 128Right-handed 310
Helix 41
AE5
E
129 146Right-handed alpha
Helix 42
AE6
F
9 22Right-handed alpha
Helix 43
AE7
F
29 40Right-handed alpha
Helix 44
AE8
F
42 52Right-handed alpha
Helix 45
AE9
F
56 64Right-handed alpha
Helix 46
AF1
F
65 75Right-handed alpha
Helix 47
AF2
F
80 102Right-handed alpha
Helix 48
AF3
F
103 113Right-handed alpha
Helix 49
AF4
F
115 119Right-handed 310
Helix 50
AF5
F
124 128Right-handed 310
Helix 51
AF6
F
129 145Right-handed alpha
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There are 4 sheets in PDB entry 6GW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
132 136anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
105 109anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
61 66anti-parallel
Strand 3
D
132 136anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
117 121anti-parallel
Strand 3
D
105 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il