Analysis of interatomic Contacts of Structural Units in PDB entry:
6GWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GWJ entry

There are 3 chains in PDB entry 6GWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 60ARG 143
D
 MET 1PRO 50
K
 PRO 2ASP 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6GWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
71 83Right-handed alpha
Helix 2
AA2
B
112 138Right-handed alpha
Helix 3
AA3
D
28 49Right-handed alpha
Helix 4
AA4
K
41 65Right-handed alpha
Helix 5
AA5
K
67 71Right-handed 310
Helix 6
AA6
K
82 101Right-handed alpha
Helix 7
AA7
K
109 122Right-handed alpha
Helix 8
AA8
K
156 168Right-handed alpha
Helix 9
AA9
K
175 185Right-handed alpha
Helix 10
AB1
K
204 222Right-handed alpha
Helix 11
AB2
K
225 253Right-handed alpha
Helix 12
AB3
K
261 265Right-handed 310
Helix 13
AB4
K
266 281Right-handed alpha
Helix 14
AB5
K
295 310Right-handed alpha
Helix 15
AB6
K
314 318Right-handed 310
Helix 16
AB7
K
325 329Right-handed 310
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There are 5 sheets in PDB entry 6GWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 100first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
61 68anti-parallel
Strand 4
D
3 8anti-parallel
Strand 5
D
14 19anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
23 26first strand
Strand 2
K
13 20anti-parallel
Strand 3
K
29 31anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
23 26first strand
Strand 2
K
13 20anti-parallel
Strand 3
K
3 8anti-parallel
Strand 4
K
73 79parallel
Strand 5
K
104 108parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
145 151first strand
Strand 2
K
136 142anti-parallel
Strand 3
K
127 131anti-parallel
Strand 4
K
256 260parallel
Strand 5
K
283 286parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
197 198first strand
Strand 2
K
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il