Analysis of interatomic Contacts of Structural Units in PDB entry:
6GXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GXS entry

There are 4 chains in PDB entry 6GXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	ALA 374
B	SER 13	SER 375
C	SER 14	ALA 374
D	SER 14	SER 375

There are 27 helices in PDB entry 6GXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	28	Right-handed 310
Helix 2	AA2	A	80	82	Right-handed 310
Helix 3	AA3	A	130	132	Right-handed 310
Helix 4	AA4	A	182	184	Right-handed 310
Helix 5	AA5	A	234	236	Right-handed 310
Helix 6	AA6	A	286	288	Right-handed 310
Helix 7	AA7	A	338	340	Right-handed 310
Helix 8	AA8	B	26	28	Right-handed 310
Helix 9	AA9	B	80	82	Right-handed 310
Helix 10	AB1	B	130	132	Right-handed 310
Helix 11	AB2	B	182	184	Right-handed 310
Helix 12	AB3	B	234	236	Right-handed 310
Helix 13	AB4	B	286	288	Right-handed 310
Helix 14	AB5	B	338	340	Right-handed 310
Helix 15	AB6	C	26	28	Right-handed 310
Helix 16	AB7	C	80	82	Right-handed 310
Helix 17	AB8	C	130	132	Right-handed 310
Helix 18	AB9	C	182	184	Right-handed 310
Helix 19	AC1	C	234	236	Right-handed 310
Helix 20	AC2	C	286	288	Right-handed 310
Helix 21	AC3	C	338	340	Right-handed 310
Helix 22	AC4	D	26	28	Right-handed 310
Helix 23	AC5	D	80	82	Right-handed 310
Helix 24	AC6	D	130	132	Right-handed 310
Helix 25	AC7	D	234	236	Right-handed 310
Helix 26	AC8	D	286	288	Right-handed 310
Helix 27	AC9	D	338	340	Right-handed 310

There are 28 sheets in PDB entry 6GXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	24	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	42	48	anti-parallel
Strand 4	A	54	59	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	78	first strand
Strand 2	A	84	90	anti-parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	107	112	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	146	151	anti-parallel
Strand 4	A	157	162	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	180	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	197	203	anti-parallel
Strand 4	A	209	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	232	first strand
Strand 2	A	238	244	anti-parallel
Strand 3	A	249	255	anti-parallel
Strand 4	A	261	266	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	284	first strand
Strand 2	A	290	296	anti-parallel
Strand 3	A	301	307	anti-parallel
Strand 4	A	313	318	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	336	first strand
Strand 2	A	342	348	anti-parallel
Strand 3	A	353	359	anti-parallel
Strand 4	A	365	370	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	24	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	78	first strand
Strand 2	B	84	90	anti-parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	107	112	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	134	138	anti-parallel
Strand 3	B	146	151	anti-parallel
Strand 4	B	157	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	180	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	197	203	anti-parallel
Strand 4	B	209	214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	232	first strand
Strand 2	B	238	244	anti-parallel
Strand 3	B	249	255	anti-parallel
Strand 4	B	261	266	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	284	first strand
Strand 2	B	290	296	anti-parallel
Strand 3	B	301	307	anti-parallel
Strand 4	B	313	318	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	336	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	353	359	anti-parallel
Strand 4	B	365	370	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	24	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	42	48	anti-parallel
Strand 4	C	54	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	78	first strand
Strand 2	C	84	90	anti-parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	107	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	128	first strand
Strand 2	C	134	138	anti-parallel
Strand 3	C	146	151	anti-parallel
Strand 4	C	157	162	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	180	first strand
Strand 2	C	186	192	anti-parallel
Strand 3	C	197	203	anti-parallel
Strand 4	C	209	214	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	232	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	249	255	anti-parallel
Strand 4	C	261	266	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	284	first strand
Strand 2	C	290	296	anti-parallel
Strand 3	C	301	307	anti-parallel
Strand 4	C	313	318	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	336	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	353	359	anti-parallel
Strand 4	C	365	370	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	24	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	42	48	anti-parallel
Strand 4	D	54	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	78	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	107	112	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	128	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	146	151	anti-parallel
Strand 4	D	157	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	180	first strand
Strand 2	D	186	192	anti-parallel
Strand 3	D	197	203	anti-parallel
Strand 4	D	209	214	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	232	first strand
Strand 2	D	238	244	anti-parallel
Strand 3	D	249	255	anti-parallel
Strand 4	D	261	266	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	284	first strand
Strand 2	D	290	296	anti-parallel
Strand 3	D	301	307	anti-parallel
Strand 4	D	313	318	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	336	first strand
Strand 2	D	342	348	anti-parallel
Strand 3	D	353	359	anti-parallel
Strand 4	D	365	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GXS