Analysis of interatomic Contacts of Structural Units in PDB entry:
6GXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GXV entry

There are 2 chains in PDB entry 6GXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	GLN 484
B	GLY 4	GLN 484

There are 31 helices in PDB entry 6GXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	38	Right-handed alpha
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	158	160	Right-handed 310
Helix 4	AA4	A	208	227	Right-handed alpha
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	240	256	Right-handed alpha
Helix 7	AA7	A	270	281	Right-handed alpha
Helix 8	AA8	A	289	302	Right-handed alpha
Helix 9	AA9	A	307	311	Right-handed 310
Helix 10	AB1	A	315	320	Right-handed alpha
Helix 11	AB2	A	347	358	Right-handed alpha
Helix 12	AB3	A	367	371	Right-handed alpha
Helix 13	AB4	A	373	377	Right-handed 310
Helix 14	AB5	A	381	395	Right-handed alpha
Helix 15	AB6	A	442	446	Right-handed 310
Helix 16	AB7	B	22	30	Right-handed alpha
Helix 17	AB8	B	30	38	Right-handed alpha
Helix 18	AB9	B	81	95	Right-handed alpha
Helix 19	AC1	B	158	160	Right-handed 310
Helix 20	AC2	B	208	227	Right-handed alpha
Helix 21	AC3	B	235	239	Right-handed 310
Helix 22	AC4	B	240	256	Right-handed alpha
Helix 23	AC5	B	270	281	Right-handed alpha
Helix 24	AC6	B	289	302	Right-handed alpha
Helix 25	AC7	B	307	311	Right-handed 310
Helix 26	AC8	B	315	320	Right-handed alpha
Helix 27	AC9	B	347	358	Right-handed alpha
Helix 28	AD1	B	367	371	Right-handed alpha
Helix 29	AD2	B	373	377	Right-handed 310
Helix 30	AD3	B	381	395	Right-handed alpha
Helix 31	AD4	B	442	446	Right-handed 310

There are 12 sheets in PDB entry 6GXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	41	44	parallel
Strand 3	A	98	103	parallel
Strand 4	A	230	233	parallel
Strand 5	A	261	264	parallel
Strand 6	A	286	288	parallel
Strand 7	A	324	327	parallel
Strand 8	A	362	366	parallel
Strand 9	A	9	11	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	60	62	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	162	165	anti-parallel
Strand 4	A	177	180	anti-parallel
Strand 5	A	113	123	anti-parallel
Strand 6	A	126	130	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	162	165	anti-parallel
Strand 4	A	177	180	anti-parallel
Strand 5	A	113	123	anti-parallel
Strand 6	A	135	142	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	409	414	anti-parallel
Strand 3	A	425	430	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	449	452	anti-parallel
Strand 6	A	460	462	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	440	first strand
Strand 2	A	468	473	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	41	44	parallel
Strand 3	B	98	103	parallel
Strand 4	B	230	233	parallel
Strand 5	B	261	264	parallel
Strand 6	B	286	288	parallel
Strand 7	B	324	326	parallel
Strand 8	B	362	366	parallel
Strand 9	B	9	11	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	60	62	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	162	165	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	113	123	anti-parallel
Strand 6	B	126	130	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	162	165	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	113	123	anti-parallel
Strand 6	B	135	142	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	409	414	anti-parallel
Strand 3	B	425	430	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	449	452	anti-parallel
Strand 6	B	460	462	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	440	first strand
Strand 2	B	468	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GXV