Analysis of interatomic Contacts of Structural Units in PDB entry:
6GY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GY8 entry

There are 2 chains in PDB entry 6GY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41LYS 405
B
 GLY 40LEU 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6GY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 60Right-handed alpha
Helix 2
AA2
A
64 73Right-handed alpha
Helix 3
AA3
A
83 136Right-handed alpha
Helix 4
AA4
A
137 144Right-handed alpha
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
169 203Right-handed alpha
Helix 7
AA7
A
215 229Right-handed alpha
Helix 8
AA8
A
231 257Right-handed alpha
Helix 9
AA9
A
288 360Right-handed alpha
Helix 10
AB1
A
367 405Right-handed alpha
Helix 11
AB2
B
44 60Right-handed alpha
Helix 12
AB3
B
64 73Right-handed alpha
Helix 13
AB4
B
83 136Right-handed alpha
Helix 14
AB5
B
137 144Right-handed alpha
Helix 15
AB6
B
146 151Right-handed alpha
Helix 16
AB7
B
169 204Right-handed alpha
Helix 17
AB8
B
215 229Right-handed alpha
Helix 18
AB9
B
231 257Right-handed alpha
Helix 19
AC1
B
286 360Right-handed alpha
Helix 20
AC2
B
367 405Right-handed alpha
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There are 4 sheets in PDB entry 6GY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
166 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
212 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
166 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
212 213anti-parallel
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