Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GYA entry

There are 4 chains in PDB entry 6GYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	GLN 484
B	GLY 4	GLN 484
C	GLY 4	GLN 484
D	GLY 4	GLN 484

There are 62 helices in PDB entry 6GYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	38	Right-handed alpha
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	158	160	Right-handed 310
Helix 4	AA4	A	208	227	Right-handed alpha
Helix 5	AA5	A	235	239	Right-handed 310
Helix 6	AA6	A	240	256	Right-handed alpha
Helix 7	AA7	A	270	280	Right-handed alpha
Helix 8	AA8	A	289	301	Right-handed alpha
Helix 9	AA9	A	307	311	Right-handed 310
Helix 10	AB1	A	315	320	Right-handed alpha
Helix 11	AB2	A	347	357	Right-handed alpha
Helix 12	AB3	A	367	371	Right-handed alpha
Helix 13	AB4	A	373	377	Right-handed 310
Helix 14	AB5	A	381	395	Right-handed alpha
Helix 15	AB6	A	442	446	Right-handed 310
Helix 16	AB7	B	22	38	Right-handed alpha
Helix 17	AB8	B	81	95	Right-handed alpha
Helix 18	AB9	B	158	160	Right-handed 310
Helix 19	AC1	B	208	227	Right-handed alpha
Helix 20	AC2	B	235	239	Right-handed 310
Helix 21	AC3	B	240	256	Right-handed alpha
Helix 22	AC4	B	270	280	Right-handed alpha
Helix 23	AC5	B	289	301	Right-handed alpha
Helix 24	AC6	B	307	311	Right-handed 310
Helix 25	AC7	B	315	320	Right-handed alpha
Helix 26	AC8	B	347	357	Right-handed alpha
Helix 27	AC9	B	367	371	Right-handed alpha
Helix 28	AD1	B	373	377	Right-handed 310
Helix 29	AD2	B	381	395	Right-handed alpha
Helix 30	AD3	B	442	446	Right-handed 310
Helix 31	AD4	C	22	38	Right-handed alpha
Helix 32	AD5	C	81	95	Right-handed alpha
Helix 33	AD6	C	145	149	Right-handed 310
Helix 34	AD7	C	158	160	Right-handed 310
Helix 35	AD8	C	208	227	Right-handed alpha
Helix 36	AD9	C	235	239	Right-handed 310
Helix 37	AE1	C	240	256	Right-handed alpha
Helix 38	AE2	C	270	280	Right-handed alpha
Helix 39	AE3	C	289	301	Right-handed alpha
Helix 40	AE4	C	307	311	Right-handed 310
Helix 41	AE5	C	315	320	Right-handed alpha
Helix 42	AE6	C	347	357	Right-handed alpha
Helix 43	AE7	C	367	371	Right-handed alpha
Helix 44	AE8	C	373	377	Right-handed 310
Helix 45	AE9	C	381	396	Right-handed alpha
Helix 46	AF1	C	442	446	Right-handed 310
Helix 47	AF2	D	22	38	Right-handed alpha
Helix 48	AF3	D	81	95	Right-handed alpha
Helix 49	AF4	D	145	149	Right-handed 310
Helix 50	AF5	D	158	160	Right-handed 310
Helix 51	AF6	D	208	227	Right-handed alpha
Helix 52	AF7	D	235	239	Right-handed 310
Helix 53	AF8	D	240	256	Right-handed alpha
Helix 54	AF9	D	270	280	Right-handed alpha
Helix 55	AG1	D	289	301	Right-handed alpha
Helix 56	AG2	D	307	311	Right-handed 310
Helix 57	AG3	D	315	320	Right-handed alpha
Helix 58	AG4	D	347	357	Right-handed alpha
Helix 59	AG5	D	367	371	Right-handed alpha
Helix 60	AG6	D	373	377	Right-handed 310
Helix 61	AG7	D	381	396	Right-handed alpha
Helix 62	AG8	D	442	446	Right-handed 310

There are 24 sheets in PDB entry 6GYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	41	44	parallel
Strand 3	A	98	103	parallel
Strand 4	A	230	233	parallel
Strand 5	A	261	264	parallel
Strand 6	A	286	288	parallel
Strand 7	A	324	326	parallel
Strand 8	A	362	366	parallel
Strand 9	A	9	11	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	60	62	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	162	165	anti-parallel
Strand 4	A	177	180	anti-parallel
Strand 5	A	113	123	anti-parallel
Strand 6	A	126	130	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	202	204	anti-parallel
Strand 3	A	162	165	anti-parallel
Strand 4	A	177	180	anti-parallel
Strand 5	A	113	123	anti-parallel
Strand 6	A	135	142	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	409	414	anti-parallel
Strand 3	A	425	430	anti-parallel
Strand 4	A	478	483	anti-parallel
Strand 5	A	449	452	anti-parallel
Strand 6	A	460	462	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	440	first strand
Strand 2	A	468	473	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	41	44	parallel
Strand 3	B	98	103	parallel
Strand 4	B	230	233	parallel
Strand 5	B	261	264	parallel
Strand 6	B	286	288	parallel
Strand 7	B	324	326	parallel
Strand 8	B	362	366	parallel
Strand 9	B	9	11	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	60	62	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	162	165	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	113	123	anti-parallel
Strand 6	B	126	130	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	202	204	anti-parallel
Strand 3	B	162	165	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	113	123	anti-parallel
Strand 6	B	135	142	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	409	414	anti-parallel
Strand 3	B	425	430	anti-parallel
Strand 4	B	478	483	anti-parallel
Strand 5	B	449	452	anti-parallel
Strand 6	B	460	462	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	440	first strand
Strand 2	B	468	473	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	41	44	parallel
Strand 3	C	98	103	parallel
Strand 4	C	230	233	parallel
Strand 5	C	261	264	parallel
Strand 6	C	286	288	parallel
Strand 7	C	324	326	parallel
Strand 8	C	362	366	parallel
Strand 9	C	9	11	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	60	62	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	202	204	anti-parallel
Strand 3	C	162	165	anti-parallel
Strand 4	C	177	180	anti-parallel
Strand 5	C	113	123	anti-parallel
Strand 6	C	126	130	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	202	204	anti-parallel
Strand 3	C	162	165	anti-parallel
Strand 4	C	177	180	anti-parallel
Strand 5	C	113	123	anti-parallel
Strand 6	C	135	142	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	403	first strand
Strand 2	C	409	414	anti-parallel
Strand 3	C	425	430	anti-parallel
Strand 4	C	478	483	anti-parallel
Strand 5	C	449	452	anti-parallel
Strand 6	C	460	462	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	440	first strand
Strand 2	C	468	473	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	41	44	parallel
Strand 3	D	98	103	parallel
Strand 4	D	230	233	parallel
Strand 5	D	261	264	parallel
Strand 6	D	286	288	parallel
Strand 7	D	324	327	parallel
Strand 8	D	362	366	parallel
Strand 9	D	9	11	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	60	62	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	202	204	anti-parallel
Strand 3	D	162	165	anti-parallel
Strand 4	D	177	180	anti-parallel
Strand 5	D	113	123	anti-parallel
Strand 6	D	126	130	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	202	204	anti-parallel
Strand 3	D	162	165	anti-parallel
Strand 4	D	177	180	anti-parallel
Strand 5	D	113	123	anti-parallel
Strand 6	D	135	142	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	403	first strand
Strand 2	D	409	414	anti-parallel
Strand 3	D	425	430	anti-parallel
Strand 4	D	478	483	anti-parallel
Strand 5	D	449	452	anti-parallel
Strand 6	D	460	462	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	440	first strand
Strand 2	D	468	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYA