Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYF entry

There are 2 chains in PDB entry 6GYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9TYR 379
B
 LYS 8SER 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6GYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 41Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
125 134Right-handed alpha
Helix 6
AA6
A
150 163Right-handed alpha
Helix 7
AA7
A
164 171Right-handed 310
Helix 8
AA8
A
172 180Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
211 221Right-handed alpha
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
228 248Right-handed alpha
Helix 13
AB4
A
261 273Right-handed alpha
Helix 14
AB5
A
274 291Right-handed alpha
Helix 15
AB6
A
319 334Right-handed alpha
Helix 16
AB7
A
336 338Right-handed 310
Helix 17
AB8
A
357 371Right-handed alpha
Helix 18
AB9
B
27 41Right-handed alpha
Helix 19
AC1
B
56 60Right-handed 310
Helix 20
AC2
B
62 74Right-handed alpha
Helix 21
AC3
B
96 112Right-handed alpha
Helix 22
AC4
B
125 134Right-handed alpha
Helix 23
AC5
B
150 163Right-handed alpha
Helix 24
AC6
B
167 171Right-handed 310
Helix 25
AC7
B
172 180Right-handed alpha
Helix 26
AC8
B
192 204Right-handed alpha
Helix 27
AC9
B
211 221Right-handed alpha
Helix 28
AD1
B
223 227Right-handed 310
Helix 29
AD2
B
228 248Right-handed alpha
Helix 30
AD3
B
261 273Right-handed alpha
Helix 31
AD4
B
274 291Right-handed alpha
Helix 32
AD5
B
319 334Right-handed alpha
Helix 33
AD6
B
336 338Right-handed 310
Helix 34
AD7
B
357 371Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6GYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
43 50parallel
Strand 3
A
15 21parallel
Strand 4
A
118 123parallel
Strand 5
A
142 147parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
181 186parallel
Strand 3
A
296 299parallel
Strand 4
A
340 342parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 86first strand
Strand 2
B
43 50parallel
Strand 3
B
15 21parallel
Strand 4
B
118 123parallel
Strand 5
B
142 147parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 259first strand
Strand 2
B
181 186parallel
Strand 3
B
296 299parallel
Strand 4
B
340 342parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il