Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYN entry

There are 4 chains in PDB entry 6GYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 214LEU 708
B
 MET 214LEU 708
C
 MET 214LEU 708
D
 MET 214LEU 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 6GYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
216 222Right-handed alpha
Helix 2
AA2
A
227 234Right-handed alpha
Helix 3
AA3
A
236 249Right-handed alpha
Helix 4
AA4
A
259 286Right-handed alpha
Helix 5
AA5
A
292 313Right-handed alpha
Helix 6
AA6
A
314 316Right-handed 310
Helix 7
AA7
A
329 341Right-handed alpha
Helix 8
AA8
A
341 350Right-handed alpha
Helix 9
AA9
A
351 364Right-handed alpha
Helix 10
AB1
A
371 384Right-handed alpha
Helix 11
AB2
A
385 389Right-handed 310
Helix 12
AB3
A
390 410Right-handed alpha
Helix 13
AB4
A
412 443Right-handed alpha
Helix 14
AB5
A
449 454Right-handed alpha
Helix 15
AB6
A
460 475Right-handed alpha
Helix 16
AB7
A
488 518Right-handed alpha
Helix 17
AB8
A
521 541Right-handed alpha
Helix 18
AB9
A
544 559Right-handed alpha
Helix 19
AC1
A
565 573Right-handed alpha
Helix 20
AC2
A
574 591Right-handed alpha
Helix 21
AC3
A
600 608Right-handed alpha
Helix 22
AC4
A
609 611Right-handed 310
Helix 23
AC5
A
660 666Right-handed alpha
Helix 24
AC6
A
686 696Right-handed alpha
Helix 25
AC7
A
696 708Right-handed alpha
Helix 26
AC8
B
216 222Right-handed alpha
Helix 27
AC9
B
227 234Right-handed alpha
Helix 28
AD1
B
236 249Right-handed alpha
Helix 29
AD2
B
259 286Right-handed alpha
Helix 30
AD3
B
292 313Right-handed alpha
Helix 31
AD4
B
314 316Right-handed 310
Helix 32
AD5
B
329 341Right-handed alpha
Helix 33
AD6
B
341 350Right-handed alpha
Helix 34
AD7
B
351 364Right-handed alpha
Helix 35
AD8
B
371 384Right-handed alpha
Helix 36
AD9
B
385 389Right-handed 310
Helix 37
AE1
B
390 410Right-handed alpha
Helix 38
AE2
B
412 443Right-handed alpha
Helix 39
AE3
B
449 454Right-handed alpha
Helix 40
AE4
B
460 475Right-handed alpha
Helix 41
AE5
B
488 518Right-handed alpha
Helix 42
AE6
B
521 541Right-handed alpha
Helix 43
AE7
B
544 559Right-handed alpha
Helix 44
AE8
B
565 573Right-handed alpha
Helix 45
AE9
B
574 591Right-handed alpha
Helix 46
AF1
B
600 608Right-handed alpha
Helix 47
AF2
B
609 611Right-handed 310
Helix 48
AF3
B
660 666Right-handed alpha
Helix 49
AF4
B
686 696Right-handed alpha
Helix 50
AF5
B
696 708Right-handed alpha
Helix 51
AF6
C
216 222Right-handed alpha
Helix 52
AF7
C
227 234Right-handed alpha
Helix 53
AF8
C
236 249Right-handed alpha
Helix 54
AF9
C
259 286Right-handed alpha
Helix 55
AG1
C
292 313Right-handed alpha
Helix 56
AG2
C
314 316Right-handed 310
Helix 57
AG3
C
329 341Right-handed alpha
Helix 58
AG4
C
341 350Right-handed alpha
Helix 59
AG5
C
351 364Right-handed alpha
Helix 60
AG6
C
371 384Right-handed alpha
Helix 61
AG7
C
385 389Right-handed 310
Helix 62
AG8
C
390 410Right-handed alpha
Helix 63
AG9
C
412 443Right-handed alpha
Helix 64
AH1
C
449 454Right-handed alpha
Helix 65
AH2
C
460 475Right-handed alpha
Helix 66
AH3
C
488 518Right-handed alpha
Helix 67
AH4
C
521 541Right-handed alpha
Helix 68
AH5
C
544 559Right-handed alpha
Helix 69
AH6
C
565 573Right-handed alpha
Helix 70
AH7
C
574 591Right-handed alpha
Helix 71
AH8
C
600 608Right-handed alpha
Helix 72
AH9
C
609 611Right-handed 310
Helix 73
AI1
C
660 666Right-handed alpha
Helix 74
AI2
C
686 696Right-handed alpha
Helix 75
AI3
C
696 708Right-handed alpha
Helix 76
AI4
D
216 222Right-handed alpha
Helix 77
AI5
D
227 234Right-handed alpha
Helix 78
AI6
D
236 249Right-handed alpha
Helix 79
AI7
D
259 286Right-handed alpha
Helix 80
AI8
D
292 313Right-handed alpha
Helix 81
AI9
D
314 316Right-handed 310
Helix 82
AJ1
D
329 341Right-handed alpha
Helix 83
AJ2
D
341 350Right-handed alpha
Helix 84
AJ3
D
351 364Right-handed alpha
Helix 85
AJ4
D
371 384Right-handed alpha
Helix 86
AJ5
D
385 389Right-handed 310
Helix 87
AJ6
D
390 410Right-handed alpha
Helix 88
AJ7
D
412 443Right-handed alpha
Helix 89
AJ8
D
449 454Right-handed alpha
Helix 90
AJ9
D
460 475Right-handed alpha
Helix 91
AK1
D
488 518Right-handed alpha
Helix 92
AK2
D
521 541Right-handed alpha
Helix 93
AK3
D
544 559Right-handed alpha
Helix 94
AK4
D
565 573Right-handed alpha
Helix 95
AK5
D
574 591Right-handed alpha
Helix 96
AK6
D
600 608Right-handed alpha
Helix 97
AK7
D
609 611Right-handed 310
Helix 98
AK8
D
660 666Right-handed alpha
Helix 99
AK9
D
686 696Right-handed alpha
Helix 100
AL1
D
696 708Right-handed alpha
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There are 8 sheets in PDB entry 6GYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 616first strand
Strand 2
A
679 685anti-parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
657 658anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 623first strand
Strand 2
A
672 675anti-parallel
Strand 3
A
640 644anti-parallel
Strand 4
A
648 652anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 616first strand
Strand 2
B
679 685anti-parallel
Strand 3
B
631 637anti-parallel
Strand 4
B
657 658anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
621 623first strand
Strand 2
B
672 675anti-parallel
Strand 3
B
640 644anti-parallel
Strand 4
B
648 652anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
612 616first strand
Strand 2
C
679 685anti-parallel
Strand 3
C
631 637anti-parallel
Strand 4
C
657 658anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
621 623first strand
Strand 2
C
672 675anti-parallel
Strand 3
C
640 644anti-parallel
Strand 4
C
648 652anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
612 616first strand
Strand 2
D
679 685anti-parallel
Strand 3
D
631 637anti-parallel
Strand 4
D
657 658anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
621 623first strand
Strand 2
D
672 675anti-parallel
Strand 3
D
640 644anti-parallel
Strand 4
D
648 652anti-parallel
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