Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GYO entry

There are 4 chains in PDB entry 6GYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 214	ILE 714
B	MET 214	ILE 714
C	MET 214	ILE 714
D	MET 214	ILE 714

There are104 helices in PDB entry 6GYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	229	234	Right-handed alpha
Helix 2	AA2	A	236	249	Right-handed alpha
Helix 3	AA3	A	260	286	Right-handed alpha
Helix 4	AA4	A	292	313	Right-handed alpha
Helix 5	AA5	A	329	340	Right-handed alpha
Helix 6	AA6	A	342	350	Right-handed alpha
Helix 7	AA7	A	351	364	Right-handed alpha
Helix 8	AA8	A	365	368	Right-handed 310
Helix 9	AA9	A	371	384	Right-handed alpha
Helix 10	AB1	A	385	389	Right-handed 310
Helix 11	AB2	A	390	405	Right-handed alpha
Helix 12	AB3	A	405	410	Right-handed alpha
Helix 13	AB4	A	412	442	Right-handed alpha
Helix 14	AB5	A	449	454	Right-handed alpha
Helix 15	AB6	A	460	477	Right-handed alpha
Helix 16	AB7	A	488	518	Right-handed alpha
Helix 17	AB8	A	521	542	Right-handed alpha
Helix 18	AB9	A	544	559	Right-handed alpha
Helix 19	AC1	A	565	573	Right-handed alpha
Helix 20	AC2	A	574	586	Right-handed alpha
Helix 21	AC3	A	586	593	Right-handed alpha
Helix 22	AC4	A	595	599	Right-handed 310
Helix 23	AC5	A	600	609	Right-handed alpha
Helix 24	AC6	A	660	666	Right-handed alpha
Helix 25	AC7	A	686	696	Right-handed alpha
Helix 26	AC8	A	699	713	Right-handed alpha
Helix 27	AC9	B	229	234	Right-handed alpha
Helix 28	AD1	B	236	249	Right-handed alpha
Helix 29	AD2	B	260	286	Right-handed alpha
Helix 30	AD3	B	292	313	Right-handed alpha
Helix 31	AD4	B	329	340	Right-handed alpha
Helix 32	AD5	B	342	350	Right-handed alpha
Helix 33	AD6	B	351	364	Right-handed alpha
Helix 34	AD7	B	365	368	Right-handed 310
Helix 35	AD8	B	371	384	Right-handed alpha
Helix 36	AD9	B	385	389	Right-handed 310
Helix 37	AE1	B	390	405	Right-handed alpha
Helix 38	AE2	B	405	410	Right-handed alpha
Helix 39	AE3	B	412	442	Right-handed alpha
Helix 40	AE4	B	449	454	Right-handed alpha
Helix 41	AE5	B	460	477	Right-handed alpha
Helix 42	AE6	B	488	518	Right-handed alpha
Helix 43	AE7	B	521	542	Right-handed alpha
Helix 44	AE8	B	544	559	Right-handed alpha
Helix 45	AE9	B	565	573	Right-handed alpha
Helix 46	AF1	B	574	586	Right-handed alpha
Helix 47	AF2	B	586	593	Right-handed alpha
Helix 48	AF3	B	595	599	Right-handed 310
Helix 49	AF4	B	600	609	Right-handed alpha
Helix 50	AF5	B	660	666	Right-handed alpha
Helix 51	AF6	B	686	696	Right-handed alpha
Helix 52	AF7	B	699	713	Right-handed alpha
Helix 53	AF8	C	229	234	Right-handed alpha
Helix 54	AF9	C	236	249	Right-handed alpha
Helix 55	AG1	C	260	286	Right-handed alpha
Helix 56	AG2	C	292	313	Right-handed alpha
Helix 57	AG3	C	329	340	Right-handed alpha
Helix 58	AG4	C	342	350	Right-handed alpha
Helix 59	AG5	C	351	364	Right-handed alpha
Helix 60	AG6	C	365	368	Right-handed 310
Helix 61	AG7	C	371	384	Right-handed alpha
Helix 62	AG8	C	385	389	Right-handed 310
Helix 63	AG9	C	390	405	Right-handed alpha
Helix 64	AH1	C	405	410	Right-handed alpha
Helix 65	AH2	C	412	442	Right-handed alpha
Helix 66	AH3	C	449	454	Right-handed alpha
Helix 67	AH4	C	460	477	Right-handed alpha
Helix 68	AH5	C	488	518	Right-handed alpha
Helix 69	AH6	C	521	542	Right-handed alpha
Helix 70	AH7	C	544	559	Right-handed alpha
Helix 71	AH8	C	565	573	Right-handed alpha
Helix 72	AH9	C	574	586	Right-handed alpha
Helix 73	AI1	C	586	593	Right-handed alpha
Helix 74	AI2	C	595	599	Right-handed 310
Helix 75	AI3	C	600	609	Right-handed alpha
Helix 76	AI4	C	660	666	Right-handed alpha
Helix 77	AI5	C	686	696	Right-handed alpha
Helix 78	AI6	C	699	713	Right-handed alpha
Helix 79	AI7	D	229	234	Right-handed alpha
Helix 80	AI8	D	236	249	Right-handed alpha
Helix 81	AI9	D	260	286	Right-handed alpha
Helix 82	AJ1	D	292	313	Right-handed alpha
Helix 83	AJ2	D	329	340	Right-handed alpha
Helix 84	AJ3	D	342	350	Right-handed alpha
Helix 85	AJ4	D	351	364	Right-handed alpha
Helix 86	AJ5	D	365	368	Right-handed 310
Helix 87	AJ6	D	371	384	Right-handed alpha
Helix 88	AJ7	D	385	389	Right-handed 310
Helix 89	AJ8	D	390	405	Right-handed alpha
Helix 90	AJ9	D	405	410	Right-handed alpha
Helix 91	AK1	D	412	442	Right-handed alpha
Helix 92	AK2	D	449	454	Right-handed alpha
Helix 93	AK3	D	460	477	Right-handed alpha
Helix 94	AK4	D	488	518	Right-handed alpha
Helix 95	AK5	D	521	542	Right-handed alpha
Helix 96	AK6	D	544	559	Right-handed alpha
Helix 97	AK7	D	565	573	Right-handed alpha
Helix 98	AK8	D	574	586	Right-handed alpha
Helix 99	AK9	D	586	593	Right-handed alpha
Helix 100	AL1	D	595	599	Right-handed 310
Helix 101	AL2	D	600	609	Right-handed alpha
Helix 102	AL3	D	660	666	Right-handed alpha
Helix 103	AL4	D	686	696	Right-handed alpha
Helix 104	AL5	D	699	713	Right-handed alpha

There are 12 sheets in PDB entry 6GYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	326	327	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	616	first strand
Strand 2	A	679	685	anti-parallel
Strand 3	A	631	637	anti-parallel
Strand 4	A	657	658	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	623	first strand
Strand 2	A	672	675	anti-parallel
Strand 3	A	640	643	anti-parallel
Strand 4	A	650	652	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	326	327	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	616	first strand
Strand 2	B	679	685	anti-parallel
Strand 3	B	631	637	anti-parallel
Strand 4	B	657	658	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	623	first strand
Strand 2	B	672	675	anti-parallel
Strand 3	B	640	643	anti-parallel
Strand 4	B	650	652	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	326	327	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	616	first strand
Strand 2	C	679	685	anti-parallel
Strand 3	C	631	637	anti-parallel
Strand 4	C	657	658	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	621	623	first strand
Strand 2	C	672	675	anti-parallel
Strand 3	C	640	643	anti-parallel
Strand 4	C	650	652	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	326	327	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	616	first strand
Strand 2	D	679	685	anti-parallel
Strand 3	D	631	637	anti-parallel
Strand 4	D	657	658	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	621	623	first strand
Strand 2	D	672	675	anti-parallel
Strand 3	D	640	643	anti-parallel
Strand 4	D	650	652	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYO