Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYP entry

There are 5 chains in PDB entry 6GYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 53SER 608
A
 SER 3ILE 478
C
 MET 1SER 608
D
 SER 4GLU 192
E
 GLU 27PRO 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are111 helices in PDB entry 6GYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
58 72Right-handed alpha
Helix 2
AA2
B
74 79Right-handed alpha
Helix 3
AA3
B
94 105Right-handed alpha
Helix 4
AA4
B
107 122Right-handed alpha
Helix 5
AA5
B
125 130Right-handed alpha
Helix 6
AA6
B
132 135Right-handed 310
Helix 7
AA7
B
136 146Right-handed alpha
Helix 8
AA8
B
153 173Right-handed alpha
Helix 9
AA9
B
175 181Right-handed alpha
Helix 10
AB1
B
185 193Right-handed alpha
Helix 11
AB2
B
204 222Right-handed alpha
Helix 12
AB3
B
230 241Right-handed alpha
Helix 13
AB4
B
244 249Right-handed alpha
Helix 14
AB5
B
251 265Right-handed alpha
Helix 15
AB6
B
279 302Right-handed alpha
Helix 16
AB7
B
343 357Right-handed alpha
Helix 17
AB8
B
366 385Right-handed alpha
Helix 18
AB9
B
394 422Right-handed alpha
Helix 19
AC1
B
426 444Right-handed alpha
Helix 20
AC2
B
445 447Right-handed 310
Helix 21
AC3
B
450 455Right-handed 310
Helix 22
AC4
B
456 477Right-handed alpha
Helix 23
AC5
B
480 494Right-handed alpha
Helix 24
AC6
B
495 496Right-handed 310
Helix 25
AC7
B
497 500Right-handed 310
Helix 26
AC8
B
501 524Right-handed alpha
Helix 27
AC9
B
535 552Right-handed alpha
Helix 28
AD1
B
554 560Right-handed alpha
Helix 29
AD2
B
589 601Right-handed alpha
Helix 30
AD3
B
602 607Right-handed 310
Helix 31
AD4
A
5 12Right-handed alpha
Helix 32
AD5
A
13 22Right-handed alpha
Helix 33
AD6
A
56 66Right-handed alpha
Helix 34
AD7
A
74 78Right-handed 310
Helix 35
AD8
A
83 94Right-handed alpha
Helix 36
AD9
A
97 109Right-handed alpha
Helix 37
AE1
A
143 151Right-handed alpha
Helix 38
AE2
A
151 156Right-handed alpha
Helix 39
AE3
A
176 190Right-handed alpha
Helix 40
AE4
A
257 265Right-handed alpha
Helix 41
AE5
A
266 270Right-handed 310
Helix 42
AE6
A
280 288Right-handed alpha
Helix 43
AE7
A
346 350Right-handed 310
Helix 44
AE8
A
371 380Right-handed alpha
Helix 45
AE9
A
383 391Right-handed alpha
Helix 46
AF1
A
423 435Right-handed alpha
Helix 47
AF2
A
456 460Right-handed alpha
Helix 48
AF3
A
461 463Right-handed 310
Helix 49
AF4
C
56 74Right-handed alpha
Helix 50
AF5
C
93 106Right-handed alpha
Helix 51
AF6
C
107 122Right-handed alpha
Helix 52
AF7
C
125 130Right-handed alpha
Helix 53
AF8
C
132 135Right-handed 310
Helix 54
AF9
C
136 144Right-handed alpha
Helix 55
AG1
C
145 149Right-handed 310
Helix 56
AG2
C
154 173Right-handed alpha
Helix 57
AG3
C
175 183Right-handed alpha
Helix 58
AG4
C
185 193Right-handed alpha
Helix 59
AG5
C
204 223Right-handed alpha
Helix 60
AG6
C
230 241Right-handed alpha
Helix 61
AG7
C
244 249Right-handed alpha
Helix 62
AG8
C
249 266Right-handed alpha
Helix 63
AG9
C
279 302Right-handed alpha
Helix 64
AH1
C
312 316Right-handed 310
Helix 65
AH2
C
341 357Right-handed alpha
Helix 66
AH3
C
366 385Right-handed alpha
Helix 67
AH4
C
393 422Right-handed alpha
Helix 68
AH5
C
427 443Right-handed alpha
Helix 69
AH6
C
444 448Right-handed 310
Helix 70
AH7
C
450 456Right-handed 310
Helix 71
AH8
C
457 477Right-handed alpha
Helix 72
AH9
C
479 494Right-handed alpha
Helix 73
AI1
C
495 496Right-handed 310
Helix 74
AI2
C
497 500Right-handed 310
Helix 75
AI3
C
501 524Right-handed alpha
Helix 76
AI4
C
535 552Right-handed alpha
Helix 77
AI5
C
554 562Right-handed alpha
Helix 78
AI6
C
589 601Right-handed alpha
Helix 79
AI7
C
602 606Right-handed 310
Helix 80
AI8
D
20 24Right-handed alpha
Helix 81
AI9
D
26 33Right-handed alpha
Helix 82
AJ1
D
83 97Right-handed alpha
Helix 83
AJ2
D
108 113Right-handed alpha
Helix 84
AJ3
D
117 122Right-handed alpha
Helix 85
AJ4
D
127 141Right-handed alpha
Helix 86
AJ5
D
143 150Right-handed alpha
Helix 87
AJ6
D
151 159Right-handed alpha
Helix 88
AJ7
D
163 169Right-handed alpha
Helix 89
AJ8
D
177 188Right-handed alpha
Helix 90
AJ9
E
30 35Right-handed alpha
Helix 91
AK1
E
38 59Right-handed alpha
Helix 92
AK2
E
81 94Right-handed alpha
Helix 93
AK3
E
107 139Right-handed alpha
Helix 94
AK4
E
147 170Right-handed alpha
Helix 95
AK5
E
176 182Right-handed alpha
Helix 96
AK6
E
183 192Right-handed alpha
Helix 97
AK7
E
207 222Right-handed alpha
Helix 98
AK8
E
227 233Right-handed alpha
Helix 99
AK9
E
281 295Right-handed alpha
Helix 100
AL1
E
334 349Right-handed alpha
Helix 101
AL2
E
371 377Right-handed alpha
Helix 102
AL3
E
379 384Right-handed 310
Helix 103
AL4
E
400 408Right-handed alpha
Helix 104
AL5
E
429 435Right-handed alpha
Helix 105
AL6
E
436 444Right-handed alpha
Helix 106
AL7
E
451 479Right-handed alpha
Helix 107
AL8
E
482 486Right-handed 310
Helix 108
AL9
E
487 491Right-handed 310
Helix 109
AM1
E
492 503Right-handed alpha
Helix 110
AM2
E
504 506Right-handed 310
Helix 111
AM3
E
526 532Right-handed alpha
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There are 10 sheets in PDB entry 6GYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
C
152 153anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 528first strand
Strand 2
B
533 534anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
138 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
196 198parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
311 314parallel
Strand 3
A
336 339parallel
Strand 4
A
360 361parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
366 367parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
475 478parallel
Strand 3
A
452 455parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
527 528anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
5 9anti-parallel
Strand 3
D
75 78parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
239 240first strand
Strand 2
E
250 253anti-parallel
Strand 3
E
266 270anti-parallel
Strand 4
E
368 370anti-parallel
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