Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GYR entry

There are 4 chains in PDB entry 6GYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1045	ASP 1664
B	ALA 1045	ASP 1664
C	LYS 1046	ASP 1664
D	ALA 1045	ASP 1664

There are 88 helices in PDB entry 6GYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1050	1067	Right-handed alpha
Helix 2	AA2	A	1072	1076	Right-handed 310
Helix 3	AA3	A	1088	1093	Right-handed alpha
Helix 4	AA4	A	1098	1108	Right-handed alpha
Helix 5	AA5	A	1113	1132	Right-handed alpha
Helix 6	AA6	A	1136	1160	Right-handed alpha
Helix 7	AA7	A	1202	1208	Right-handed alpha
Helix 8	AA8	A	1229	1231	Right-handed 310
Helix 9	AA9	A	1256	1260	Right-handed alpha
Helix 10	AB1	A	1272	1279	Right-handed alpha
Helix 11	AB2	A	1296	1314	Right-handed alpha
Helix 12	AB3	A	1336	1344	Right-handed alpha
Helix 13	AB4	A	1406	1408	Right-handed 310
Helix 14	AB5	A	1409	1429	Right-handed alpha
Helix 15	AB6	A	1459	1477	Right-handed alpha
Helix 16	AB7	A	1486	1493	Right-handed alpha
Helix 17	AB8	A	1497	1501	Right-handed 310
Helix 18	AB9	A	1507	1532	Right-handed alpha
Helix 19	AC1	A	1578	1591	Right-handed alpha
Helix 20	AC2	A	1602	1608	Right-handed 310
Helix 21	AC3	A	1621	1625	Right-handed 310
Helix 22	AC4	A	1627	1638	Right-handed alpha
Helix 23	AC5	A	1643	1663	Right-handed alpha
Helix 24	AC6	B	1050	1067	Right-handed alpha
Helix 25	AC7	B	1072	1076	Right-handed 310
Helix 26	AC8	B	1088	1093	Right-handed alpha
Helix 27	AC9	B	1098	1108	Right-handed alpha
Helix 28	AD1	B	1113	1132	Right-handed alpha
Helix 29	AD2	B	1136	1160	Right-handed alpha
Helix 30	AD3	B	1256	1260	Right-handed alpha
Helix 31	AD4	B	1272	1279	Right-handed alpha
Helix 32	AD5	B	1296	1314	Right-handed alpha
Helix 33	AD6	B	1336	1343	Right-handed alpha
Helix 34	AD7	B	1406	1408	Right-handed 310
Helix 35	AD8	B	1409	1429	Right-handed alpha
Helix 36	AD9	B	1459	1477	Right-handed alpha
Helix 37	AE1	B	1486	1493	Right-handed alpha
Helix 38	AE2	B	1497	1501	Right-handed 310
Helix 39	AE3	B	1507	1533	Right-handed alpha
Helix 40	AE4	B	1578	1592	Right-handed alpha
Helix 41	AE5	B	1603	1609	Right-handed alpha
Helix 42	AE6	B	1626	1637	Right-handed alpha
Helix 43	AE7	B	1643	1663	Right-handed alpha
Helix 44	AE8	C	1050	1068	Right-handed alpha
Helix 45	AE9	C	1072	1076	Right-handed 310
Helix 46	AF1	C	1080	1085	Right-handed alpha
Helix 47	AF2	C	1088	1093	Right-handed alpha
Helix 48	AF3	C	1098	1109	Right-handed alpha
Helix 49	AF4	C	1113	1132	Right-handed alpha
Helix 50	AF5	C	1136	1161	Right-handed alpha
Helix 51	AF6	C	1227	1231	Right-handed 310
Helix 52	AF7	C	1256	1260	Right-handed alpha
Helix 53	AF8	C	1272	1279	Right-handed alpha
Helix 54	AF9	C	1296	1314	Right-handed alpha
Helix 55	AG1	C	1336	1343	Right-handed alpha
Helix 56	AG2	C	1406	1408	Right-handed 310
Helix 57	AG3	C	1409	1429	Right-handed alpha
Helix 58	AG4	C	1459	1477	Right-handed alpha
Helix 59	AG5	C	1486	1494	Right-handed alpha
Helix 60	AG6	C	1497	1501	Right-handed 310
Helix 61	AG7	C	1507	1532	Right-handed alpha
Helix 62	AG8	C	1580	1591	Right-handed alpha
Helix 63	AG9	C	1603	1608	Right-handed alpha
Helix 64	AH1	C	1626	1637	Right-handed alpha
Helix 65	AH2	C	1643	1662	Right-handed alpha
Helix 66	AH3	D	1050	1068	Right-handed alpha
Helix 67	AH4	D	1072	1077	Right-handed alpha
Helix 68	AH5	D	1080	1085	Right-handed alpha
Helix 69	AH6	D	1088	1093	Right-handed alpha
Helix 70	AH7	D	1099	1109	Right-handed alpha
Helix 71	AH8	D	1113	1132	Right-handed alpha
Helix 72	AH9	D	1136	1160	Right-handed alpha
Helix 73	AI1	D	1202	1206	Right-handed 310
Helix 74	AI2	D	1256	1260	Right-handed alpha
Helix 75	AI3	D	1272	1279	Right-handed alpha
Helix 76	AI4	D	1296	1314	Right-handed alpha
Helix 77	AI5	D	1336	1344	Right-handed alpha
Helix 78	AI6	D	1406	1408	Right-handed 310
Helix 79	AI7	D	1409	1429	Right-handed alpha
Helix 80	AI8	D	1459	1477	Right-handed alpha
Helix 81	AI9	D	1486	1493	Right-handed alpha
Helix 82	AJ1	D	1497	1501	Right-handed 310
Helix 83	AJ2	D	1507	1519	Right-handed alpha
Helix 84	AJ3	D	1522	1532	Right-handed alpha
Helix 85	AJ4	D	1578	1591	Right-handed alpha
Helix 86	AJ5	D	1602	1607	Right-handed 310
Helix 87	AJ6	D	1626	1637	Right-handed alpha
Helix 88	AJ7	D	1643	1662	Right-handed alpha

There are 17 sheets in PDB entry 6GYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1177	first strand
Strand 2	A	1183	1185	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1199	1201	first strand
Strand 2	A	1190	1193	anti-parallel
Strand 3	A	1232	1235	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1214	first strand
Strand 2	A	1225	1227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1244	1246	first strand
Strand 2	A	1253	1255	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1321	1334	first strand
Strand 2	A	1352	1366	anti-parallel
Strand 3	A	1369	1381	anti-parallel
Strand 4	A	1392	1400	anti-parallel
Strand 5	A	1432	1436	parallel
Strand 6	A	1595	1599	anti-parallel
Strand 7	A	1482	1485	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1175	1176	first strand
Strand 2	B	1184	1185	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1198	1201	first strand
Strand 2	B	1190	1194	anti-parallel
Strand 3	B	1232	1235	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1213	1215	first strand
Strand 2	B	1224	1226	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1244	1246	first strand
Strand 2	B	1253	1255	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1321	1334	first strand
Strand 2	B	1352	1365	anti-parallel
Strand 3	B	1370	1381	anti-parallel
Strand 4	B	1392	1400	anti-parallel
Strand 5	B	1432	1436	parallel
Strand 6	B	1595	1599	anti-parallel
Strand 7	B	1482	1485	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1198	1200	first strand
Strand 2	C	1190	1194	anti-parallel
Strand 3	C	1232	1235	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	C	1253	1255	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1321	1334	first strand
Strand 2	C	1352	1366	anti-parallel
Strand 3	C	1369	1381	anti-parallel
Strand 4	C	1392	1400	anti-parallel
Strand 5	C	1432	1436	parallel
Strand 6	C	1595	1599	anti-parallel
Strand 7	C	1482	1485	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1198	1200	first strand
Strand 2	D	1190	1194	anti-parallel
Strand 3	D	1232	1235	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1214	1215	first strand
Strand 2	D	1224	1225	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1244	1246	first strand
Strand 2	D	1253	1255	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1321	1334	first strand
Strand 2	D	1352	1366	anti-parallel
Strand 3	D	1369	1381	anti-parallel
Strand 4	D	1392	1400	anti-parallel
Strand 5	D	1432	1436	parallel
Strand 6	D	1595	1599	anti-parallel
Strand 7	D	1482	1485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYR