Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYT entry

There are 5 chains in PDB entry 6GYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1047SER 1279
B
 ALA 1045LYS 1284
C
 GLY 9GLY 11
C
 GLY 13ALA 15
C
 ALA 17ALA 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6GYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1050 1067Right-handed alpha
Helix 2
AA2
A
1072 1076Right-handed 310
Helix 3
AA3
A
1080 1085Right-handed alpha
Helix 4
AA4
A
1088 1093Right-handed alpha
Helix 5
AA5
A
1098 1109Right-handed alpha
Helix 6
AA6
A
1113 1132Right-handed alpha
Helix 7
AA7
A
1136 1160Right-handed alpha
Helix 8
AA8
A
1256 1260Right-handed alpha
Helix 9
AA9
A
1272 1279Right-handed alpha
Helix 10
AB1
B
1050 1067Right-handed alpha
Helix 11
AB2
B
1072 1076Right-handed 310
Helix 12
AB3
B
1080 1085Right-handed alpha
Helix 13
AB4
B
1088 1093Right-handed alpha
Helix 14
AB5
B
1098 1109Right-handed alpha
Helix 15
AB6
B
1113 1132Right-handed alpha
Helix 16
AB7
B
1136 1160Right-handed alpha
Helix 17
AB8
B
1256 1260Right-handed alpha
Helix 18
AB9
B
1272 1282Right-handed alpha
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There are 2 sheets in PDB entry 6GYT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1244 1246first strand
Strand 2
A
1253 1255anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1244 1246first strand
Strand 2
B
1253 1255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il