Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYU entry

There are 5 chains in PDB entry 6GYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1SER 608
A
 SER 3ILE 478
C
 MET 1SER 608
D
 SER 4GLU 192
E
 GLU 27PRO 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 6GYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 21Right-handed alpha
Helix 2
AA2
B
39 44Right-handed alpha
Helix 3
AA3
B
57 72Right-handed alpha
Helix 4
AA4
B
74 79Right-handed alpha
Helix 5
AA5
B
94 106Right-handed alpha
Helix 6
AA6
B
107 122Right-handed alpha
Helix 7
AA7
B
122 130Right-handed alpha
Helix 8
AA8
B
132 135Right-handed 310
Helix 9
AA9
B
136 146Right-handed alpha
Helix 10
AB1
B
154 174Right-handed alpha
Helix 11
AB2
B
175 183Right-handed alpha
Helix 12
AB3
B
185 193Right-handed alpha
Helix 13
AB4
B
199 203Right-handed 310
Helix 14
AB5
B
204 224Right-handed alpha
Helix 15
AB6
B
230 241Right-handed alpha
Helix 16
AB7
B
244 249Right-handed alpha
Helix 17
AB8
B
251 266Right-handed alpha
Helix 18
AB9
B
279 302Right-handed alpha
Helix 19
AC1
B
343 348Right-handed alpha
Helix 20
AC2
B
349 357Right-handed alpha
Helix 21
AC3
B
366 386Right-handed alpha
Helix 22
AC4
B
394 422Right-handed alpha
Helix 23
AC5
B
426 443Right-handed alpha
Helix 24
AC6
B
444 447Right-handed 310
Helix 25
AC7
B
450 455Right-handed 310
Helix 26
AC8
B
456 477Right-handed alpha
Helix 27
AC9
B
480 495Right-handed alpha
Helix 28
AD1
B
501 522Right-handed alpha
Helix 29
AD2
B
535 552Right-handed alpha
Helix 30
AD3
B
554 562Right-handed alpha
Helix 31
AD4
B
589 601Right-handed alpha
Helix 32
AD5
B
602 607Right-handed 310
Helix 33
AD6
A
5 12Right-handed alpha
Helix 34
AD7
A
13 24Right-handed alpha
Helix 35
AD8
A
58 66Right-handed alpha
Helix 36
AD9
A
70 75Right-handed alpha
Helix 37
AE1
A
76 78Right-handed 310
Helix 38
AE2
A
81 94Right-handed alpha
Helix 39
AE3
A
97 109Right-handed alpha
Helix 40
AE4
A
143 151Right-handed alpha
Helix 41
AE5
A
151 156Right-handed alpha
Helix 42
AE6
A
176 190Right-handed alpha
Helix 43
AE7
A
257 266Right-handed alpha
Helix 44
AE8
A
283 288Right-handed alpha
Helix 45
AE9
A
346 350Right-handed 310
Helix 46
AF1
A
371 380Right-handed alpha
Helix 47
AF2
A
383 391Right-handed alpha
Helix 48
AF3
A
423 435Right-handed alpha
Helix 49
AF4
A
456 460Right-handed alpha
Helix 50
AF5
A
461 463Right-handed 310
Helix 51
AF6
C
56 72Right-handed alpha
Helix 52
AF7
C
94 106Right-handed alpha
Helix 53
AF8
C
107 122Right-handed alpha
Helix 54
AF9
C
122 127Right-handed alpha
Helix 55
AG1
C
133 135Right-handed 310
Helix 56
AG2
C
136 146Right-handed alpha
Helix 57
AG3
C
153 173Right-handed alpha
Helix 58
AG4
C
175 183Right-handed alpha
Helix 59
AG5
C
185 193Right-handed alpha
Helix 60
AG6
C
204 224Right-handed alpha
Helix 61
AG7
C
230 241Right-handed alpha
Helix 62
AG8
C
244 249Right-handed alpha
Helix 63
AG9
C
249 266Right-handed alpha
Helix 64
AH1
C
279 303Right-handed alpha
Helix 65
AH2
C
312 316Right-handed 310
Helix 66
AH3
C
341 356Right-handed alpha
Helix 67
AH4
C
357 359Right-handed 310
Helix 68
AH5
C
366 386Right-handed alpha
Helix 69
AH6
C
393 422Right-handed alpha
Helix 70
AH7
C
427 443Right-handed alpha
Helix 71
AH8
C
443 448Right-handed alpha
Helix 72
AH9
C
450 456Right-handed 310
Helix 73
AI1
C
457 477Right-handed alpha
Helix 74
AI2
C
479 495Right-handed alpha
Helix 75
AI3
C
501 524Right-handed alpha
Helix 76
AI4
C
535 552Right-handed alpha
Helix 77
AI5
C
554 563Right-handed alpha
Helix 78
AI6
C
589 601Right-handed alpha
Helix 79
AI7
C
602 606Right-handed 310
Helix 80
AI8
D
22 25Right-handed 310
Helix 81
AI9
D
26 33Right-handed alpha
Helix 82
AJ1
D
83 97Right-handed alpha
Helix 83
AJ2
D
108 113Right-handed alpha
Helix 84
AJ3
D
117 124Right-handed alpha
Helix 85
AJ4
D
127 141Right-handed alpha
Helix 86
AJ5
D
145 150Right-handed alpha
Helix 87
AJ6
D
151 159Right-handed alpha
Helix 88
AJ7
D
163 169Right-handed alpha
Helix 89
AJ8
D
177 188Right-handed alpha
Helix 90
AJ9
E
30 35Right-handed alpha
Helix 91
AK1
E
38 59Right-handed alpha
Helix 92
AK2
E
76 78Right-handed 310
Helix 93
AK3
E
81 94Right-handed alpha
Helix 94
AK4
E
107 138Right-handed alpha
Helix 95
AK5
E
147 170Right-handed alpha
Helix 96
AK6
E
176 182Right-handed alpha
Helix 97
AK7
E
183 193Right-handed alpha
Helix 98
AK8
E
207 223Right-handed alpha
Helix 99
AK9
E
227 233Right-handed alpha
Helix 100
AL1
E
281 295Right-handed alpha
Helix 101
AL2
E
334 349Right-handed alpha
Helix 102
AL3
E
370 377Right-handed alpha
Helix 103
AL4
E
379 383Right-handed 310
Helix 104
AL5
E
395 399Right-handed 310
Helix 105
AL6
E
400 408Right-handed alpha
Helix 106
AL7
E
428 433Right-handed alpha
Helix 107
AL8
E
437 444Right-handed alpha
Helix 108
AL9
E
451 479Right-handed alpha
Helix 109
AM1
E
482 486Right-handed 310
Helix 110
AM2
E
492 504Right-handed alpha
Helix 111
AM3
E
505 507Right-handed 310
Helix 112
AM4
E
526 533Right-handed alpha
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There are 11 sheets in PDB entry 6GYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
C
89 90anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 528first strand
Strand 2
B
533 534anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
E
72 74anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
138 140anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
196 198parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
311 314parallel
Strand 3
A
336 339parallel
Strand 4
A
358 361parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
366 367parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
475 478parallel
Strand 3
A
452 455parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
527 528anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
5 9anti-parallel
Strand 3
D
75 78parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
239 241first strand
Strand 2
E
249 256anti-parallel
Strand 3
E
265 269anti-parallel
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