Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYW entry

There are 2 chains in PDB entry 6GYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 110GLY 260
B
 SER 111THR 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6GYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 132Right-handed alpha
Helix 2
AA2
A
145 150Right-handed alpha
Helix 3
AA3
A
160 168Right-handed alpha
Helix 4
AA4
A
206 218Right-handed alpha
Helix 5
AA5
A
246 260Right-handed alpha
Helix 6
AA6
B
112 132Right-handed alpha
Helix 7
AA7
B
145 150Right-handed alpha
Helix 8
AA8
B
160 169Right-handed alpha
Helix 9
AA9
B
206 218Right-handed alpha
Helix 10
AB1
B
246 259Right-handed alpha
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There are 2 sheets in PDB entry 6GYW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
178 182anti-parallel
Strand 4
A
135 139parallel
Strand 5
A
222 226anti-parallel
Strand 6
A
233 237anti-parallel
Strand 7
A
240 242anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
185 191anti-parallel
Strand 3
B
178 182anti-parallel
Strand 4
B
135 139parallel
Strand 5
B
222 226anti-parallel
Strand 6
B
233 237anti-parallel
Strand 7
B
240 242anti-parallel
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