Analysis of interatomic Contacts of Structural Units in PDB entry:
6GYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GYX entry

There are 2 chains in PDB entry 6GYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 109GLY 260
A
 SER 111GLY 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6GYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
111 132Right-handed alpha
Helix 2
AA2
B
145 150Right-handed alpha
Helix 3
AA3
B
160 169Right-handed alpha
Helix 4
AA4
B
206 219Right-handed alpha
Helix 5
AA5
B
246 260Right-handed alpha
Helix 6
AA6
A
112 131Right-handed alpha
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
A
160 168Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
207 219Right-handed alpha
Helix 11
AB2
A
246 259Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6GYX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
185 191anti-parallel
Strand 3
B
178 182anti-parallel
Strand 4
B
135 139parallel
Strand 5
B
222 226anti-parallel
Strand 6
B
233 237anti-parallel
Strand 7
B
240 242anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
178 182anti-parallel
Strand 4
A
135 139parallel
Strand 5
A
222 226anti-parallel
Strand 6
A
233 237anti-parallel
Strand 7
A
240 242anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il