Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GZ2 entry

There is 1 chain in PDB entry 6GZ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 112GLU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6GZ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 136Right-handed alpha
Helix 2
AA2
A
152 160Right-handed alpha
Helix 3
AA3
A
202 209Right-handed 310
Helix 4
AA4
A
223 227Right-handed 310
Helix 5
AA5
A
229 234Right-handed alpha
Helix 6
AA6
A
242 251Right-handed alpha
Helix 7
AA7
A
261 272Right-handed alpha
Helix 8
AA8
A
298 316Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6GZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
113 118parallel
Strand 3
A
164 167parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
176 191anti-parallel
Strand 6
A
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
113 118parallel
Strand 3
A
164 167parallel
Strand 4
A
284 292anti-parallel
Strand 5
A
176 191anti-parallel
Strand 6
A
273 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
236 240parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il