Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GZB entry

There are 4 chains in PDB entry 6GZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 74	PHE 366
B	THR 76	THR 363
C	VAL 77	PHE 366
D	SER 75	SER 365

There are 36 helices in PDB entry 6GZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	110	Right-handed alpha
Helix 2	AA2	A	115	121	Right-handed 310
Helix 3	AA3	A	151	155	Right-handed 310
Helix 4	AA4	A	157	159	Right-handed 310
Helix 5	AA5	A	160	173	Right-handed alpha
Helix 6	AA6	A	205	209	Right-handed 310
Helix 7	AA7	A	253	265	Right-handed alpha
Helix 8	AA8	A	298	302	Right-handed 310
Helix 9	AA9	A	313	325	Right-handed alpha
Helix 10	AB1	B	102	110	Right-handed alpha
Helix 11	AB2	B	115	120	Right-handed 310
Helix 12	AB3	B	151	155	Right-handed 310
Helix 13	AB4	B	157	159	Right-handed 310
Helix 14	AB5	B	160	173	Right-handed alpha
Helix 15	AB6	B	205	209	Right-handed 310
Helix 16	AB7	B	253	265	Right-handed alpha
Helix 17	AB8	B	298	302	Right-handed 310
Helix 18	AB9	B	313	325	Right-handed alpha
Helix 19	AC1	C	102	110	Right-handed alpha
Helix 20	AC2	C	115	121	Right-handed 310
Helix 21	AC3	C	151	155	Right-handed 310
Helix 22	AC4	C	157	159	Right-handed 310
Helix 23	AC5	C	160	173	Right-handed alpha
Helix 24	AC6	C	205	209	Right-handed 310
Helix 25	AC7	C	253	265	Right-handed alpha
Helix 26	AC8	C	298	302	Right-handed 310
Helix 27	AC9	C	313	325	Right-handed alpha
Helix 28	AD1	D	102	110	Right-handed alpha
Helix 29	AD2	D	115	121	Right-handed 310
Helix 30	AD3	D	151	155	Right-handed 310
Helix 31	AD4	D	157	159	Right-handed 310
Helix 32	AD5	D	160	173	Right-handed alpha
Helix 33	AD6	D	205	209	Right-handed 310
Helix 34	AD7	D	253	265	Right-handed alpha
Helix 35	AD8	D	298	303	Right-handed 310
Helix 36	AD9	D	313	325	Right-handed alpha

There are 16 sheets in PDB entry 6GZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	98	first strand
Strand 2	A	76	85	anti-parallel
Strand 3	A	125	126	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	180	185	parallel
Strand 4	A	188	189	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	233	first strand
Strand 2	A	238	248	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	332	337	parallel
Strand 4	A	355	356	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	97	first strand
Strand 2	B	77	85	anti-parallel
Strand 3	B	125	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	139	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	180	185	parallel
Strand 4	B	188	189	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	234	first strand
Strand 2	B	237	248	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	289	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	332	337	parallel
Strand 4	B	355	356	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	96	first strand
Strand 2	C	78	85	anti-parallel
Strand 3	C	125	126	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	180	185	parallel
Strand 4	C	188	189	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	233	first strand
Strand 2	C	238	248	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	289	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	332	337	parallel
Strand 4	C	355	356	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	84	first strand
Strand 2	D	90	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	180	185	parallel
Strand 4	D	188	189	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	233	first strand
Strand 2	D	238	248	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	289	first strand
Strand 2	D	292	297	anti-parallel
Strand 3	D	332	337	parallel
Strand 4	D	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZB