Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GZD entry

There is 1 chain in PDB entry 6GZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9ALA 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 68Right-handed alpha
Helix 2
AA2
A
96 104Right-handed alpha
Helix 3
AA3
A
109 130Right-handed alpha
Helix 4
AA4
A
138 140Right-handed 310
Helix 5
AA5
A
146 150Right-handed 310
Helix 6
AA6
A
189 194Right-handed alpha
Helix 7
AA7
A
199 217Right-handed alpha
Helix 8
AA8
A
228 243Right-handed alpha
Helix 9
AA9
A
244 249Right-handed alpha
Helix 10
AB1
A
253 266Right-handed alpha
Helix 11
AB2
A
273 288Right-handed alpha
Helix 12
AB3
A
296 305Right-handed alpha
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There are 3 sheets in PDB entry 6GZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
30 36anti-parallel
Strand 4
A
42 49anti-parallel
Strand 5
A
85 91anti-parallel
Strand 6
A
76 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
162 163anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
153 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il