Analysis of interatomic Contacts of Structural Units in PDB entry:
6GZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GZF entry

There are 2 chains in PDB entry 6GZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -6LEU 320
B
 HIS -5GLU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6GZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
109 118Right-handed alpha
Helix 5
AA5
A
142 153Right-handed alpha
Helix 6
AA6
A
169 182Right-handed alpha
Helix 7
AA7
A
186 193Right-handed alpha
Helix 8
AA8
A
196 218Right-handed alpha
Helix 9
AA9
A
230 241Right-handed alpha
Helix 10
AB1
A
257 261Right-handed 310
Helix 11
AB2
A
263 273Right-handed alpha
Helix 12
AB3
A
277 281Right-handed 310
Helix 13
AB4
A
282 293Right-handed alpha
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
B
23 27Right-handed 310
Helix 16
AB7
B
57 71Right-handed alpha
Helix 17
AB8
B
110 118Right-handed alpha
Helix 18
AB9
B
142 153Right-handed alpha
Helix 19
AC1
B
154 158Right-handed 310
Helix 20
AC2
B
169 180Right-handed alpha
Helix 21
AC3
B
186 193Right-handed alpha
Helix 22
AC4
B
196 218Right-handed alpha
Helix 23
AC5
B
230 241Right-handed alpha
Helix 24
AC6
B
263 274Right-handed alpha
Helix 25
AC7
B
282 293Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6GZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 10anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
49 53parallel
Strand 3
A
129 132anti-parallel
Strand 4
A
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
8 10anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
49 53parallel
Strand 3
B
129 132anti-parallel
Strand 4
B
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
89 91anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il