Analysis of interatomic Contacts of Structural Units in PDB entry:
6H08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H08 entry

There are 6 chains in PDB entry 6H08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 174
A
 ALA 176LEU 294
B
 HIS -2ALA 174
B
 ALA 176LEU 294
C
 HIS -2ALA 174
C
 ALA 176LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6H08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
42 55Right-handed alpha
Helix 4
AA4
A
69 72Right-handed 310
Helix 5
AA5
A
73 78Right-handed alpha
Helix 6
AA6
A
79 84Right-handed 310
Helix 7
AA7
A
85 99Right-handed alpha
Helix 8
AA8
A
103 119Right-handed alpha
Helix 9
AA9
A
134 138Right-handed 310
Helix 10
AB1
A
150 160Right-handed alpha
Helix 11
AB2
A
164 173Right-handed alpha
Helix 12
AB3
A
174 177Right-handed 310
Helix 13
AB4
A
181 186Right-handed alpha
Helix 14
AB5
A
200 209Right-handed alpha
Helix 15
AB6
A
232 241Right-handed alpha
Helix 16
AB7
A
241 254Right-handed alpha
Helix 17
AB8
A
254 272Right-handed alpha
Helix 18
AB9
A
288 293Right-handed alpha
Helix 19
AC1
B
15 33Right-handed alpha
Helix 20
AC2
B
35 40Right-handed alpha
Helix 21
AC3
B
42 55Right-handed alpha
Helix 22
AC4
B
69 72Right-handed 310
Helix 23
AC5
B
73 78Right-handed alpha
Helix 24
AC6
B
79 84Right-handed 310
Helix 25
AC7
B
85 99Right-handed alpha
Helix 26
AC8
B
103 119Right-handed alpha
Helix 27
AC9
B
134 138Right-handed 310
Helix 28
AD1
B
150 160Right-handed alpha
Helix 29
AD2
B
164 173Right-handed alpha
Helix 30
AD3
B
174 177Right-handed 310
Helix 31
AD4
B
181 186Right-handed alpha
Helix 32
AD5
B
200 209Right-handed alpha
Helix 33
AD6
B
232 241Right-handed alpha
Helix 34
AD7
B
241 254Right-handed alpha
Helix 35
AD8
B
254 272Right-handed alpha
Helix 36
AD9
B
288 293Right-handed alpha
Helix 37
AE1
C
15 33Right-handed alpha
Helix 38
AE2
C
35 40Right-handed alpha
Helix 39
AE3
C
42 55Right-handed alpha
Helix 40
AE4
C
69 72Right-handed 310
Helix 41
AE5
C
73 78Right-handed alpha
Helix 42
AE6
C
79 84Right-handed 310
Helix 43
AE7
C
85 99Right-handed alpha
Helix 44
AE8
C
103 119Right-handed alpha
Helix 45
AE9
C
134 138Right-handed 310
Helix 46
AF1
C
150 160Right-handed alpha
Helix 47
AF2
C
164 173Right-handed alpha
Helix 48
AF3
C
174 177Right-handed 310
Helix 49
AF4
C
181 186Right-handed alpha
Helix 50
AF5
C
200 209Right-handed alpha
Helix 51
AF6
C
232 241Right-handed alpha
Helix 52
AF7
C
241 254Right-handed alpha
Helix 53
AF8
C
254 272Right-handed alpha
Helix 54
AF9
C
288 293Right-handed alpha
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There are 9 sheets in PDB entry 6H08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
274 275parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
189 190anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
230 231anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
274 275parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
189 190anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 215first strand
Strand 2
B
221 224anti-parallel
Strand 3
B
230 231anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
274 275parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
189 190anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 215first strand
Strand 2
C
221 224anti-parallel
Strand 3
C
230 231anti-parallel
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