Analysis of interatomic Contacts of Structural Units in PDB entry:
6H2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H2J entry

There are 2 chains in PDB entry 6H2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 13	SER 885
B	ASN 13	PHE 405

There are 94 helices in PDB entry 6H2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	56	73	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	95	105	Right-handed alpha
Helix 5	AA5	A	128	132	Right-handed 310
Helix 6	AA6	A	172	181	Right-handed alpha
Helix 7	AA7	A	192	198	Right-handed 310
Helix 8	AA8	A	217	221	Right-handed 310
Helix 9	AA9	A	222	226	Right-handed 310
Helix 10	AB1	A	239	247	Right-handed alpha
Helix 11	AB2	A	249	260	Right-handed alpha
Helix 12	AB3	A	273	293	Right-handed alpha
Helix 13	AB4	A	298	302	Right-handed 310
Helix 14	AB5	A	312	325	Right-handed alpha
Helix 15	AB6	A	338	342	Right-handed 310
Helix 16	AB7	A	343	352	Right-handed alpha
Helix 17	AB8	A	364	373	Right-handed alpha
Helix 18	AB9	A	383	393	Right-handed alpha
Helix 19	AC1	A	396	400	Right-handed 310
Helix 20	AC2	A	411	426	Right-handed alpha
Helix 21	AC3	A	449	455	Right-handed alpha
Helix 22	AC4	A	462	469	Right-handed alpha
Helix 23	AC5	A	483	485	Right-handed 310
Helix 24	AC6	A	486	491	Right-handed alpha
Helix 25	AC7	A	494	501	Right-handed alpha
Helix 26	AC8	A	509	528	Right-handed alpha
Helix 27	AC9	A	546	568	Right-handed alpha
Helix 28	AD1	A	600	604	Right-handed 310
Helix 29	AD2	A	605	624	Right-handed alpha
Helix 30	AD3	A	630	647	Right-handed alpha
Helix 31	AD4	A	678	687	Right-handed alpha
Helix 32	AD5	A	688	690	Right-handed 310
Helix 33	AD6	A	708	719	Right-handed alpha
Helix 34	AD7	A	723	729	Right-handed alpha
Helix 35	AD8	A	732	739	Right-handed alpha
Helix 36	AD9	A	751	763	Right-handed alpha
Helix 37	AE1	A	766	770	Right-handed 310
Helix 38	AE2	A	771	793	Right-handed alpha
Helix 39	AE3	A	795	805	Right-handed alpha
Helix 40	AE4	A	811	823	Right-handed alpha
Helix 41	AE5	A	825	833	Right-handed alpha
Helix 42	AE6	A	839	857	Right-handed alpha
Helix 43	AE7	A	879	885	Right-handed alpha
Helix 44	AE8	B	32	47	Right-handed alpha
Helix 45	AE9	B	56	73	Right-handed alpha
Helix 46	AF1	B	77	88	Right-handed alpha
Helix 47	AF2	B	95	105	Right-handed alpha
Helix 48	AF3	B	128	132	Right-handed 310
Helix 49	AF4	B	172	181	Right-handed alpha
Helix 50	AF5	B	192	198	Right-handed 310
Helix 51	AF6	B	217	221	Right-handed 310
Helix 52	AF7	B	222	226	Right-handed 310
Helix 53	AF8	B	239	246	Right-handed alpha
Helix 54	AF9	B	249	259	Right-handed alpha
Helix 55	AG1	B	273	293	Right-handed alpha
Helix 56	AG2	B	298	302	Right-handed 310
Helix 57	AG3	B	312	325	Right-handed alpha
Helix 58	AG4	B	339	342	Right-handed 310
Helix 59	AG5	B	343	352	Right-handed alpha
Helix 60	AG6	B	364	373	Right-handed alpha
Helix 61	AG7	B	383	393	Right-handed alpha
Helix 62	AG8	B	396	400	Right-handed 310
Helix 63	AG9	B	411	426	Right-handed alpha
Helix 64	AH1	B	449	455	Right-handed alpha
Helix 65	AH2	B	462	469	Right-handed alpha
Helix 66	AH3	B	483	485	Right-handed 310
Helix 67	AH4	B	486	492	Right-handed alpha
Helix 68	AH5	B	494	501	Right-handed alpha
Helix 69	AH6	B	509	528	Right-handed alpha
Helix 70	AH7	B	546	568	Right-handed alpha
Helix 71	AH8	B	600	604	Right-handed 310
Helix 72	AH9	B	605	624	Right-handed alpha
Helix 73	AI1	B	630	647	Right-handed alpha
Helix 74	AI2	B	678	687	Right-handed alpha
Helix 75	AI3	B	688	690	Right-handed 310
Helix 76	AI4	B	708	719	Right-handed alpha
Helix 77	AI5	B	723	729	Right-handed alpha
Helix 78	AI6	B	732	739	Right-handed alpha
Helix 79	AI7	B	751	763	Right-handed alpha
Helix 80	AI8	B	771	793	Right-handed alpha
Helix 81	AI9	B	795	804	Right-handed alpha
Helix 82	AJ1	B	811	822	Right-handed alpha
Helix 83	AJ2	B	825	833	Right-handed alpha
Helix 84	AJ3	B	839	858	Right-handed alpha
Helix 85	AJ4	B	879	886	Right-handed alpha
Helix 86	AJ5	B	889	898	Right-handed alpha
Helix 87	AJ6	B	909	920	Right-handed alpha
Helix 88	AJ7	B	924	926	Right-handed 310
Helix 89	AJ8	B	927	937	Right-handed alpha
Helix 90	AJ9	B	939	943	Right-handed 310
Helix 91	AK1	B	945	971	Right-handed alpha
Helix 92	AK2	B	975	990	Right-handed alpha
Helix 93	AK3	B	999	1003	Right-handed 310
Helix 94	AK4	B	1015	1031	Right-handed alpha

There are 14 sheets in PDB entry 6H2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	134	138	parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	159	166	anti-parallel
Strand 5	A	200	204	parallel
Strand 6	A	209	213	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	118	122	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	236	237	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	269	271	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	382	first strand
Strand 2	A	332	337	parallel
Strand 3	A	402	408	parallel
Strand 4	A	428	435	parallel
Strand 5	A	303	307	parallel
Strand 6	A	457	461	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	700	704	parallel
Strand 3	A	668	674	parallel
Strand 4	A	539	544	parallel
Strand 5	A	652	655	parallel
Strand 6	A	576	579	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	741	first strand
Strand 2	A	748	749	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	134	138	parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	159	166	anti-parallel
Strand 5	B	200	204	parallel
Strand 6	B	209	213	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	118	122	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	236	237	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	269	271	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	382	first strand
Strand 2	B	332	337	parallel
Strand 3	B	402	408	parallel
Strand 4	B	428	435	parallel
Strand 5	B	303	307	parallel
Strand 6	B	457	461	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	700	704	parallel
Strand 3	B	668	674	parallel
Strand 4	B	539	544	parallel
Strand 5	B	652	655	parallel
Strand 6	B	576	579	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	741	first strand
Strand 2	B	748	749	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H2J