Analysis of interatomic Contacts of Structural Units in PDB entry:
6H2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H2U entry

There are 4 chains in PDB entry 6H2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 3VAL 109
A
LEU 111HIS 211
B
MET 1ILE 32
B
PRO 34LEU 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6H2U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
32 46Right-handed alpha
Helix 4
AA4
A
63 72Right-handed alpha
Helix 5
AA5
A
83 97Right-handed alpha
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
113 117Right-handed 310
Helix 8
AA8
A
137 148Right-handed alpha
Helix 9
AA9
A
161 172Right-handed alpha
Helix 10
AB1
B
2 11Right-handed alpha
Helix 11
AB2
B
38 46Right-handed alpha
Helix 12
AB3
B
47 49Right-handed 310
Helix 13
AB4
B
50 61Right-handed alpha
Helix 14
AB5
B
73 76Right-handed 310
Helix 15
AB6
B
77 90Right-handed alpha
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There are 3 sheets in PDB entry 6H2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 106first strand
Strand 2
A
76 81parallel
Strand 3
A
54 58parallel
Strand 4
A
120 125parallel
Strand 5
A
149 158parallel
Strand 6
A
199 208anti-parallel
Strand 7
A
175 185anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 32first strand
Strand 2
B
91 99anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il