Analysis of interatomic Contacts of Structural Units in PDB entry:
6H3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H3D entry

There is 1 chain in PDB entry 6H3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6H3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
33 36Right-handed 310
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
59 66Right-handed 310
Helix 5
AA5
A
77 81Right-handed 310
Helix 6
AA6
A
93 95Right-handed 310
Helix 7
AA7
A
96 102Right-handed alpha
Helix 8
AA8
A
105 112Right-handed alpha
Helix 9
AA9
A
123 133Right-handed alpha
Helix 10
AB1
A
180 193Right-handed alpha
Helix 11
AB2
A
202 208Right-handed alpha
Helix 12
AB3
A
211 221Right-handed alpha
Helix 13
AB4
A
222 231Right-handed alpha
Helix 14
AB5
A
249 270Right-handed alpha
Helix 15
AB6
A
276 284Right-handed alpha
Helix 16
AB7
A
294 300Right-handed alpha
Helix 17
AB8
A
301 304Right-handed 310
Helix 18
AB9
A
305 320Right-handed alpha
Helix 19
AC1
A
356 376Right-handed alpha
Helix 20
AC2
A
380 401Right-handed alpha
Helix 21
AC3
A
408 411Right-handed 310
Helix 22
AC4
A
415 429Right-handed alpha
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There are 3 sheets in PDB entry 6H3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
27 31parallel
Strand 3
A
3 7parallel
Strand 4
A
87 90parallel
Strand 5
A
114 117parallel
Strand 6
A
140 144parallel
Strand 7
A
170 175anti-parallel
Strand 8
A
196 200parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
161 167parallel
Strand 4
A
149 152anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
352 354anti-parallel
Strand 3
A
405 406parallel
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