Analysis of interatomic Contacts of Structural Units in PDB entry:
6H3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H3J entry

There are 3 chains in PDB entry 6H3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 134	ASN 2403
B	VAL 24	ASN 176
C	ILE 23	ASN 419

There are 35 helices in PDB entry 6H3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	199	203	Right-handed 310
Helix 2	AA2	A	304	308	Right-handed 310
Helix 3	AA3	A	359	363	Right-handed 310
Helix 4	AA4	A	382	386	Right-handed 310
Helix 5	AA5	A	389	393	Right-handed 310
Helix 6	AA6	A	406	414	Right-handed 310
Helix 7	AA7	A	517	522	Right-handed alpha
Helix 8	AA8	A	578	583	Right-handed alpha
Helix 9	AA9	A	623	634	Right-handed alpha
Helix 10	AB1	A	643	647	Right-handed 310
Helix 11	AB2	A	656	660	Right-handed 310
Helix 12	AB3	A	810	819	Right-handed alpha
Helix 13	AB4	A	939	944	Right-handed alpha
Helix 14	AB5	A	982	986	Right-handed 310
Helix 15	AB6	A	998	1003	Right-handed alpha
Helix 16	AB7	A	1081	1089	Right-handed alpha
Helix 17	AB8	A	1099	1103	Right-handed 310
Helix 18	AB9	A	1127	1132	Right-handed alpha
Helix 19	AC1	A	1412	1417	Right-handed alpha
Helix 20	AC2	A	1427	1438	Right-handed alpha
Helix 21	AC3	A	1607	1613	Right-handed alpha
Helix 22	AC4	A	1619	1624	Right-handed alpha
Helix 23	AC5	A	1856	1861	Right-handed alpha
Helix 24	AC6	A	1989	1995	Right-handed alpha
Helix 25	AC7	A	2072	2076	Right-handed 310
Helix 26	AC8	A	2084	2104	Right-handed alpha
Helix 27	AC9	A	2129	2135	Right-handed alpha
Helix 28	AD1	A	2151	2159	Right-handed alpha
Helix 29	AD2	A	2185	2189	Right-handed 310
Helix 30	AD3	B	28	42	Right-handed alpha
Helix 31	AD4	B	126	133	Right-handed alpha
Helix 32	AD5	C	169	173	Right-handed 310
Helix 33	AD6	C	191	196	Right-handed alpha
Helix 34	AD7	C	298	303	Right-handed alpha
Helix 35	AD8	C	335	339	Right-handed 310

There are 47 sheets in PDB entry 6H3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	187	194	anti-parallel
Strand 3	A	173	183	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	2399	2400	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	169	170	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	256	259	anti-parallel
Strand 4	A	755	760	anti-parallel
Strand 5	A	779	781	anti-parallel
Strand 6	A	796	800	anti-parallel
Strand 7	A	839	841	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	763	764	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	447	448	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	318	325	anti-parallel
Strand 4	A	460	468	anti-parallel
Strand 5	A	471	474	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	318	325	anti-parallel
Strand 4	A	460	468	anti-parallel
Strand 5	A	506	507	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	617	618	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	678	679	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	772	first strand
Strand 2	A	804	805	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	832	first strand
Strand 2	A	1525	1527	anti-parallel
Strand 3	A	1536	1537	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	866	869	first strand
Strand 2	A	1258	1261	anti-parallel
Strand 3	A	1004	1009	anti-parallel
Strand 4	A	1216	1219	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	991	first strand
Strand 2	A	1237	1241	anti-parallel
Strand 3	A	1033	1034	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1201	1202	first strand
Strand 2	A	1208	1209	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1286	1290	first strand
Strand 2	A	1327	1331	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1363	1364	first strand
Strand 2	A	1504	1505	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1383	1386	first strand
Strand 2	A	1484	1488	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1540	1541	first strand
Strand 2	A	1562	1563	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1559	1560	first strand
Strand 2	A	1596	1597	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1565	1569	first strand
Strand 2	A	1587	1593	anti-parallel
Strand 3	A	1636	1638	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1565	1569	first strand
Strand 2	A	1587	1593	anti-parallel
Strand 3	A	1632	1633	anti-parallel
Strand 4	A	1670	1671	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1663	1664	first strand
Strand 2	A	1686	1689	anti-parallel
Strand 3	A	1732	1733	anti-parallel
Strand 4	A	1766	1767	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1787	1789	first strand
Strand 2	A	1815	1818	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1822	1824	first strand
Strand 2	A	1847	1849	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1851	1852	first strand
Strand 2	A	1876	1877	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1882	1883	first strand
Strand 2	A	1953	1956	anti-parallel
Strand 3	A	2011	2013	anti-parallel
Strand 4	A	2035	2039	anti-parallel
Strand 5	A	2063	2067	anti-parallel
Strand 6	A	2212	2215	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1948	1949	first strand
Strand 2	A	2018	2019	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2007	2008	first strand
Strand 2	A	2042	2045	anti-parallel
Strand 3	A	2056	2060	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2200	first strand
Strand 2	A	2257	2258	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2248	2249	first strand
Strand 2	A	2271	2272	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2293	2297	first strand
Strand 2	A	2324	2328	anti-parallel
Strand 3	A	2357	2358	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2301	first strand
Strand 2	A	2320	2321	anti-parallel
Strand 3	A	2361	2362	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2332	2333	first strand
Strand 2	A	2349	2350	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2353	2354	first strand
Strand 2	A	2375	2378	anti-parallel
Strand 3	A	2388	2391	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2370	2371	first strand
Strand 2	A	2395	2396	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	54	55	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	110	113	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	166	170	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	147	153	parallel
Strand 3	C	131	136	anti-parallel
Strand 4	C	72	76	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	113	115	anti-parallel
Strand 3	C	102	104	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	175	182	anti-parallel
Strand 3	C	223	225	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	175	182	anti-parallel
Strand 3	C	232	234	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	389	396	anti-parallel
Strand 3	C	405	409	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	389	396	anti-parallel
Strand 3	C	412	413	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	358	367	anti-parallel
Strand 3	C	322	326	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	265	267	anti-parallel
Strand 3	C	306	313	parallel
Strand 4	C	271	272	parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	265	267	anti-parallel
Strand 3	C	306	313	parallel
Strand 4	C	349	355	anti-parallel
Strand 5	C	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H3J