Analysis of interatomic Contacts of Structural Units in PDB entry:
6H45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H45 entry

There are 4 chains in PDB entry 6H45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLU 22
A
 SER 24GLY 403
B
 SER 12GLU 22
B
 SER 24GLY 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6H45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 66Right-handed alpha
Helix 2
AA2
A
90 97Right-handed alpha
Helix 3
AA3
A
107 115Right-handed alpha
Helix 4
AA4
A
139 151Right-handed alpha
Helix 5
AA5
A
168 189Right-handed alpha
Helix 6
AA6
A
206 218Right-handed alpha
Helix 7
AA7
A
235 250Right-handed alpha
Helix 8
AA8
A
263 273Right-handed alpha
Helix 9
AA9
A
281 289Right-handed alpha
Helix 10
AB1
A
303 307Right-handed 310
Helix 11
AB2
A
319 325Right-handed alpha
Helix 12
AB3
A
326 337Right-handed alpha
Helix 13
AB4
A
337 366Right-handed alpha
Helix 14
AB5
A
368 382Right-handed alpha
Helix 15
AB6
A
383 387Right-handed 310
Helix 16
AB7
A
388 398Right-handed alpha
Helix 17
AB8
B
58 65Right-handed alpha
Helix 18
AB9
B
90 97Right-handed alpha
Helix 19
AC1
B
107 116Right-handed alpha
Helix 20
AC2
B
139 151Right-handed alpha
Helix 21
AC3
B
168 189Right-handed alpha
Helix 22
AC4
B
206 218Right-handed alpha
Helix 23
AC5
B
235 250Right-handed alpha
Helix 24
AC6
B
263 273Right-handed alpha
Helix 25
AC7
B
281 289Right-handed alpha
Helix 26
AC8
B
303 307Right-handed 310
Helix 27
AC9
B
319 325Right-handed alpha
Helix 28
AD1
B
326 337Right-handed alpha
Helix 29
AD2
B
337 366Right-handed alpha
Helix 30
AD3
B
368 382Right-handed alpha
Helix 31
AD4
B
383 387Right-handed 310
Helix 32
AD5
B
388 398Right-handed alpha
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There are 8 sheets in PDB entry 6H45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
38 42anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
277 279parallel
Strand 3
A
256 259parallel
Strand 4
A
224 227parallel
Strand 5
A
196 201parallel
Strand 6
A
154 156parallel
Strand 7
A
101 104parallel
Strand 8
A
69 71parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
135 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
38 42anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
277 279parallel
Strand 3
B
256 258parallel
Strand 4
B
224 227parallel
Strand 5
B
196 201parallel
Strand 6
B
154 156parallel
Strand 7
B
101 104parallel
Strand 8
B
69 71parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
135 138anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
297 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il