Analysis of interatomic Contacts of Structural Units in PDB entry:
6H4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H4D entry

There is 1 chain in PDB entry 6H4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40PRO 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6H4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 150Right-handed alpha
Helix 2
AA2
A
160 164Right-handed 310
Helix 3
AA3
A
165 181Right-handed alpha
Helix 4
AA4
A
196 205Right-handed alpha
Helix 5
AA5
A
218 227Right-handed alpha
Helix 6
AA6
A
265 270Right-handed alpha
Helix 7
AA7
A
277 284Right-handed alpha
Helix 8
AA8
A
285 292Right-handed alpha
Helix 9
AA9
A
308 317Right-handed alpha
Helix 10
AB1
A
320 332Right-handed alpha
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There are 3 sheets in PDB entry 6H4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 53first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
66 71anti-parallel
Strand 4
A
93 99parallel
Strand 5
A
83 87anti-parallel
Strand 6
A
44 53anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
115 120anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
153 158parallel
Strand 3
A
124 129parallel
Strand 4
A
208 212parallel
Strand 5
A
261 264parallel
Strand 6
A
252 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il