Analysis of interatomic Contacts of Structural Units in PDB entry:
6H4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H4J entry

There are 2 chains in PDB entry 6H4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 155	GLN 706
B	PRO 158	ASP 704

There are 30 helices in PDB entry 6H4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	177	189	Right-handed alpha
Helix 2	AA2	A	190	199	Right-handed alpha
Helix 3	AA3	A	217	235	Right-handed alpha
Helix 4	AA4	A	242	252	Right-handed alpha
Helix 5	AA5	A	262	282	Right-handed alpha
Helix 6	AA6	A	293	300	Right-handed alpha
Helix 7	AA7	A	332	341	Right-handed alpha
Helix 8	AA8	A	402	407	Right-handed 310
Helix 9	AA9	A	408	438	Right-handed alpha
Helix 10	AB1	A	447	460	Right-handed alpha
Helix 11	AB2	A	541	579	Right-handed alpha
Helix 12	AB3	A	583	587	Right-handed 310
Helix 13	AB4	A	632	641	Right-handed alpha
Helix 14	AB5	A	659	664	Right-handed 310
Helix 15	AB6	A	687	705	Right-handed alpha
Helix 16	AB7	B	177	189	Right-handed alpha
Helix 17	AB8	B	190	199	Right-handed alpha
Helix 18	AB9	B	217	231	Right-handed alpha
Helix 19	AC1	B	242	252	Right-handed alpha
Helix 20	AC2	B	263	284	Right-handed alpha
Helix 21	AC3	B	295	300	Right-handed alpha
Helix 22	AC4	B	332	341	Right-handed alpha
Helix 23	AC5	B	402	407	Right-handed 310
Helix 24	AC6	B	408	438	Right-handed alpha
Helix 25	AC7	B	447	460	Right-handed alpha
Helix 26	AC8	B	541	579	Right-handed alpha
Helix 27	AC9	B	583	587	Right-handed 310
Helix 28	AD1	B	632	641	Right-handed alpha
Helix 29	AD2	B	659	663	Right-handed 310
Helix 30	AD3	B	689	700	Right-handed alpha

There are 10 sheets in PDB entry 6H4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	239	240	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	301	309	anti-parallel
Strand 3	A	358	365	anti-parallel
Strand 4	A	342	343	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	326	first strand
Strand 2	A	369	375	parallel
Strand 3	A	647	656	anti-parallel
Strand 4	A	590	600	anti-parallel
Strand 5	A	398	400	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	326	first strand
Strand 2	A	369	375	parallel
Strand 3	A	647	656	anti-parallel
Strand 4	A	590	600	anti-parallel
Strand 5	A	607	613	anti-parallel
Strand 6	A	620	624	anti-parallel
Strand 7	A	627	630	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	380	first strand
Strand 2	A	385	388	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	239	240	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	301	309	anti-parallel
Strand 3	B	358	365	anti-parallel
Strand 4	B	342	344	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	369	375	parallel
Strand 3	B	647	656	anti-parallel
Strand 4	B	590	600	anti-parallel
Strand 5	B	398	400	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	369	375	parallel
Strand 3	B	647	656	anti-parallel
Strand 4	B	590	600	anti-parallel
Strand 5	B	607	613	anti-parallel
Strand 6	B	620	624	anti-parallel
Strand 7	B	627	630	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	385	388	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H4J