Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6H5U entry
There are 4 chains in PDB entry 6H5U
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
SER 212 | PHE 301 |
B
|
SER 212 | SER 302 |
C
|
GLY 211 | GLU 292 |
H
|
SER 300 | SER 307 |
Back to top of page
There are 6
helices in PDB entry 6H5U. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 212 |
227 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 259 |
278 | Right-handed alpha |
| Helix 3 |
AA3 | B
| 213 |
227 | Right-handed alpha |
| Helix 4 |
AA4 | B
| 259 |
278 | Right-handed alpha |
| Helix 5 |
AA5 | C
| 212 |
227 | Right-handed alpha |
| Helix 6 |
AA6 | C
| 259 |
278 | Right-handed alpha |
Back to top of page
There are
3 sheets in PDB entry 6H5U. Click on sheet of
interest to get list of strands forming it:
AA1,
AA2,
AA3,
There are 3
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 234 |
242 | first strand |
| Strand 2 |
A
| 245 |
254 | anti-parallel |
| Strand 3 |
A
| 281 |
290 | parallel |
Back to list of sheets
Back to top of page
There are 3
strands in AA2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 234 |
242 | first strand |
| Strand 2 |
B
| 245 |
254 | anti-parallel |
| Strand 3 |
B
| 281 |
290 | parallel |
Back to list of sheets
Back to top of page
There are 3
strands in AA3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
C
| 234 |
242 | first strand |
| Strand 2 |
C
| 245 |
254 | anti-parallel |
| Strand 3 |
C
| 281 |
290 | parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il