Analysis of interatomic Contacts of Structural Units in PDB entry:
6H5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H5W entry

There are 2 chains in PDB entry 6H5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40LEU 495
A
 PRO 497SER 625
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6H5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 71Right-handed alpha
Helix 2
AA2
A
74 100Right-handed alpha
Helix 3
AA3
A
101 102Right-handed 310
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
109 120Right-handed alpha
Helix 6
AA6
A
122 127Right-handed 310
Helix 7
AA7
A
128 149Right-handed alpha
Helix 8
AA8
A
163 172Right-handed alpha
Helix 9
AA9
A
174 189Right-handed alpha
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
196 211Right-handed alpha
Helix 12
AB3
A
215 223Right-handed alpha
Helix 13
AB4
A
228 240Right-handed alpha
Helix 14
AB5
A
240 260Right-handed alpha
Helix 15
AB6
A
261 264Right-handed 310
Helix 16
AB7
A
283 285Right-handed 310
Helix 17
AB8
A
286 291Right-handed alpha
Helix 18
AB9
A
300 308Right-handed alpha
Helix 19
AC1
A
311 326Right-handed alpha
Helix 20
AC2
A
332 339Right-handed alpha
Helix 21
AC3
A
374 394Right-handed alpha
Helix 22
AC4
A
398 402Right-handed 310
Helix 23
AC5
A
406 422Right-handed alpha
Helix 24
AC6
A
423 430Right-handed alpha
Helix 25
AC7
A
439 455Right-handed alpha
Helix 26
AC8
A
456 473Right-handed alpha
Helix 27
AC9
A
480 494Right-handed alpha
Helix 28
AD1
A
506 511Right-handed 310
Helix 29
AD2
A
520 541Right-handed alpha
Helix 30
AD3
A
546 550Right-handed 310
Helix 31
AD4
A
555 567Right-handed alpha
Helix 32
AD5
A
573 583Right-handed alpha
Helix 33
AD6
A
589 611Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6H5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
495 496parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
365 368anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il