Analysis of interatomic Contacts of Structural Units in PDB entry:
6H6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H6M entry

There are 6 chains in PDB entry 6H6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 228	VAL 530
B	ARG 228	VAL 530
C	ARG 228	VAL 530
D	ARG 228	VAL 530
E	GLU 1	PRO 111
F	GLU 1	GLU 1

There are 18 helices in PDB entry 6H6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	236	240	Right-handed 310
Helix 2	AA2	A	282	286	Right-handed 310
Helix 3	AA3	A	454	465	Right-handed alpha
Helix 4	AA4	B	236	240	Right-handed 310
Helix 5	AA5	B	282	286	Right-handed 310
Helix 6	AA6	B	454	465	Right-handed alpha
Helix 7	AA7	C	236	240	Right-handed 310
Helix 8	AA8	C	282	286	Right-handed 310
Helix 9	AA9	C	454	465	Right-handed alpha
Helix 10	AB1	D	236	240	Right-handed 310
Helix 11	AB2	D	282	286	Right-handed 310
Helix 12	AB3	D	454	465	Right-handed alpha
Helix 13	AB4	E	26	29	Right-handed 310
Helix 14	AB5	E	40	44	Right-handed 310
Helix 15	AB6	E	81	85	Right-handed 310
Helix 16	AB7	F	26	29	Right-handed 310
Helix 17	AB8	F	40	44	Right-handed 310
Helix 18	AB9	F	81	85	Right-handed 310

There are 21 sheets in PDB entry 6H6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	431	436	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	509	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	332	343	anti-parallel
Strand 3	A	350	360	anti-parallel
Strand 4	A	373	378	anti-parallel
Strand 5	A	302	310	anti-parallel
Strand 6	A	289	298	anti-parallel
Strand 7	A	389	402	anti-parallel
Strand 8	A	438	439	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	332	343	anti-parallel
Strand 3	A	389	402	anti-parallel
Strand 4	A	438	439	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	497	500	anti-parallel
Strand 3	A	485	492	anti-parallel
Strand 4	A	472	479	anti-parallel
Strand 5	A	513	521	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	451	first strand
Strand 2	B	431	436	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	507	508	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	332	343	anti-parallel
Strand 3	B	350	360	anti-parallel
Strand 4	B	373	378	anti-parallel
Strand 5	B	302	310	anti-parallel
Strand 6	B	289	298	anti-parallel
Strand 7	B	389	402	anti-parallel
Strand 8	B	438	439	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	387	first strand
Strand 2	B	332	343	anti-parallel
Strand 3	B	389	402	anti-parallel
Strand 4	B	438	439	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	429	first strand
Strand 2	B	497	500	anti-parallel
Strand 3	B	485	492	anti-parallel
Strand 4	B	472	479	anti-parallel
Strand 5	B	513	521	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	431	436	anti-parallel
Strand 3	C	251	254	anti-parallel
Strand 4	C	507	508	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	332	343	anti-parallel
Strand 3	C	350	360	anti-parallel
Strand 4	C	373	378	anti-parallel
Strand 5	C	302	310	anti-parallel
Strand 6	C	289	298	anti-parallel
Strand 7	C	389	402	anti-parallel
Strand 8	C	438	439	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	387	first strand
Strand 2	C	332	343	anti-parallel
Strand 3	C	389	402	anti-parallel
Strand 4	C	438	439	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	497	501	anti-parallel
Strand 3	C	485	492	anti-parallel
Strand 4	C	472	479	anti-parallel
Strand 5	C	513	521	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	429	first strand
Strand 2	C	497	501	anti-parallel
Strand 3	C	529	530	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	451	first strand
Strand 2	D	431	436	anti-parallel
Strand 3	D	251	254	anti-parallel
Strand 4	D	507	508	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	387	first strand
Strand 2	D	332	343	anti-parallel
Strand 3	D	350	360	anti-parallel
Strand 4	D	373	378	anti-parallel
Strand 5	D	302	310	anti-parallel
Strand 6	D	289	298	anti-parallel
Strand 7	D	389	402	anti-parallel
Strand 8	D	438	439	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	387	first strand
Strand 2	D	332	343	anti-parallel
Strand 3	D	389	402	anti-parallel
Strand 4	D	438	439	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	429	first strand
Strand 2	D	496	500	anti-parallel
Strand 3	D	485	492	anti-parallel
Strand 4	D	472	479	anti-parallel
Strand 5	D	513	521	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	62	67	anti-parallel
Strand 5	E	57	59	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	100	108	parallel
Strand 3	E	86	92	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	45	49	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	72	77	anti-parallel
Strand 4	F	62	67	anti-parallel
Strand 5	F	57	59	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	100	108	parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	33	37	anti-parallel
Strand 5	F	45	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H6M