Analysis of interatomic Contacts of Structural Units in PDB entry:
6H77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H77 entry

There are 8 chains in PDB entry 6H77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	VAL 346
B	GLY 36	VAL 346
C	GLY 36	VAL 346
D	GLY 36	VAL 346
Q	MET 1	PRO 78
R	MET 1	PRO 78
S	MET 1	PRO 78
T	MET 1	PRO 78

There are 60 helices in PDB entry 6H77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	62	Right-handed alpha
Helix 2	AA2	A	67	73	Right-handed 310
Helix 3	AA3	A	82	96	Right-handed alpha
Helix 4	AA4	A	109	113	Right-handed 310
Helix 5	AA5	A	119	123	Right-handed 310
Helix 6	AA6	A	126	139	Right-handed alpha
Helix 7	AA7	A	153	167	Right-handed alpha
Helix 8	AA8	A	184	199	Right-handed alpha
Helix 9	AA9	A	232	237	Right-handed alpha
Helix 10	AB1	A	240	245	Right-handed 310
Helix 11	AB2	A	254	275	Right-handed alpha
Helix 12	AB3	A	305	321	Right-handed alpha
Helix 13	AB4	B	53	62	Right-handed alpha
Helix 14	AB5	B	67	73	Right-handed 310
Helix 15	AB6	B	82	96	Right-handed alpha
Helix 16	AB7	B	109	113	Right-handed 310
Helix 17	AB8	B	119	123	Right-handed 310
Helix 18	AB9	B	126	139	Right-handed alpha
Helix 19	AC1	B	153	167	Right-handed alpha
Helix 20	AC2	B	184	199	Right-handed alpha
Helix 21	AC3	B	232	237	Right-handed alpha
Helix 22	AC4	B	240	245	Right-handed 310
Helix 23	AC5	B	254	275	Right-handed alpha
Helix 24	AC6	B	305	321	Right-handed alpha
Helix 25	AC7	C	53	62	Right-handed alpha
Helix 26	AC8	C	67	73	Right-handed 310
Helix 27	AC9	C	82	96	Right-handed alpha
Helix 28	AD1	C	109	113	Right-handed 310
Helix 29	AD2	C	119	123	Right-handed 310
Helix 30	AD3	C	126	139	Right-handed alpha
Helix 31	AD4	C	153	167	Right-handed alpha
Helix 32	AD5	C	184	199	Right-handed alpha
Helix 33	AD6	C	232	237	Right-handed alpha
Helix 34	AD7	C	240	245	Right-handed 310
Helix 35	AD8	C	254	275	Right-handed alpha
Helix 36	AD9	C	305	321	Right-handed alpha
Helix 37	AE1	D	53	62	Right-handed alpha
Helix 38	AE2	D	67	73	Right-handed 310
Helix 39	AE3	D	82	96	Right-handed alpha
Helix 40	AE4	D	109	113	Right-handed 310
Helix 41	AE5	D	119	123	Right-handed 310
Helix 42	AE6	D	126	139	Right-handed alpha
Helix 43	AE7	D	153	167	Right-handed alpha
Helix 44	AE8	D	184	199	Right-handed alpha
Helix 45	AE9	D	232	237	Right-handed alpha
Helix 46	AF1	D	240	245	Right-handed 310
Helix 47	AF2	D	254	275	Right-handed alpha
Helix 48	AF3	D	305	321	Right-handed alpha
Helix 49	AF4	Q	28	41	Right-handed alpha
Helix 50	AF5	Q	43	47	Right-handed 310
Helix 51	AF6	Q	62	71	Right-handed alpha
Helix 52	AF7	R	28	41	Right-handed alpha
Helix 53	AF8	R	43	47	Right-handed 310
Helix 54	AF9	R	62	71	Right-handed alpha
Helix 55	AG1	S	28	41	Right-handed alpha
Helix 56	AG2	S	43	47	Right-handed 310
Helix 57	AG3	S	62	71	Right-handed alpha
Helix 58	AG4	T	28	41	Right-handed alpha
Helix 59	AG5	T	43	47	Right-handed 310
Helix 60	AG6	T	62	71	Right-handed alpha

There are 8 sheets in PDB entry 6H77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	99	103	parallel
Strand 3	A	75	79	parallel
Strand 4	A	177	180	parallel
Strand 5	A	202	207	parallel
Strand 6	A	213	219	anti-parallel
Strand 7	A	282	286	anti-parallel
Strand 8	A	294	295	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	Q	18	24	anti-parallel
Strand 3	Q	3	10	anti-parallel
Strand 4	Q	73	77	parallel
Strand 5	Q	48	51	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	99	103	parallel
Strand 3	B	75	79	parallel
Strand 4	B	177	180	parallel
Strand 5	B	202	207	parallel
Strand 6	B	213	219	anti-parallel
Strand 7	B	282	286	anti-parallel
Strand 8	B	294	295	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	T	18	24	anti-parallel
Strand 3	T	3	10	anti-parallel
Strand 4	T	73	77	parallel
Strand 5	T	48	51	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	99	103	parallel
Strand 3	C	75	79	parallel
Strand 4	C	177	180	parallel
Strand 5	C	202	207	parallel
Strand 6	C	213	219	anti-parallel
Strand 7	C	282	286	anti-parallel
Strand 8	C	294	295	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	S	18	24	anti-parallel
Strand 3	S	3	10	anti-parallel
Strand 4	S	73	77	parallel
Strand 5	S	48	51	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	99	103	parallel
Strand 3	D	75	79	parallel
Strand 4	D	177	180	parallel
Strand 5	D	202	207	parallel
Strand 6	D	213	219	anti-parallel
Strand 7	D	282	286	anti-parallel
Strand 8	D	294	295	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	R	18	24	anti-parallel
Strand 3	R	3	10	anti-parallel
Strand 4	R	73	77	parallel
Strand 5	R	48	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H77

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H77