Analysis of interatomic Contacts of Structural Units in PDB entry:
6H7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6H7J entry

There are 6 chains in PDB entry 6H7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LYS 3	ALA 108
A	ALA 40	LEU 357
C	VAL 2	SER 120
F	ASP 2	LEU 107
B	ALA 39	PHE 359
D	GLN 1	SER 120

There are 39 helices in PDB entry 6H7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	11	16	Right-handed alpha
Helix 2	AA2	E	32	38	Right-handed alpha
Helix 3	AA3	E	38	49	Right-handed alpha
Helix 4	AA4	E	66	71	Right-handed alpha
Helix 5	AA5	E	95	107	Right-handed alpha
Helix 6	AA6	A	41	69	Right-handed alpha
Helix 7	AA7	A	74	93	Right-handed alpha
Helix 8	AA8	A	93	104	Right-handed alpha
Helix 9	AA9	A	109	145	Right-handed alpha
Helix 10	AB1	A	145	153	Right-handed alpha
Helix 11	AB2	A	154	179	Right-handed alpha
Helix 12	AB3	A	186	195	Right-handed alpha
Helix 13	AB4	A	204	216	Right-handed alpha
Helix 14	AB5	A	216	273	Right-handed alpha
Helix 15	AB6	A	282	316	Right-handed alpha
Helix 16	AB7	A	321	344	Right-handed alpha
Helix 17	AB8	A	346	357	Right-handed alpha
Helix 18	AB9	C	61	64	Right-handed 310
Helix 19	AC1	C	86	90	Right-handed 310
Helix 20	AC2	F	11	16	Right-handed alpha
Helix 21	AC3	F	32	38	Right-handed alpha
Helix 22	AC4	F	38	49	Right-handed alpha
Helix 23	AC5	F	65	71	Right-handed alpha
Helix 24	AC6	F	95	107	Right-handed alpha
Helix 25	AC7	B	40	69	Right-handed alpha
Helix 26	AC8	B	74	93	Right-handed alpha
Helix 27	AC9	B	93	104	Right-handed alpha
Helix 28	AD1	B	109	145	Right-handed alpha
Helix 29	AD2	B	145	153	Right-handed alpha
Helix 30	AD3	B	154	179	Right-handed alpha
Helix 31	AD4	B	186	195	Right-handed alpha
Helix 32	AD5	B	204	216	Right-handed alpha
Helix 33	AD6	B	216	241	Right-handed alpha
Helix 34	AD7	B	284	316	Right-handed alpha
Helix 35	AD8	B	317	320	Right-handed 310
Helix 36	AD9	B	321	344	Right-handed alpha
Helix 37	AE1	B	346	357	Right-handed alpha
Helix 38	AE2	D	61	64	Right-handed 310
Helix 39	AE3	D	86	90	Right-handed 310

There are 8 sheets in PDB entry 6H7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	54	59	parallel
Strand 3	E	22	28	parallel
Strand 4	E	77	82	anti-parallel
Strand 5	E	86	91	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	71	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	114	119	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	114	119	parallel
Strand 3	C	91	99	anti-parallel
Strand 4	C	107	110	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	54	59	parallel
Strand 3	F	22	28	parallel
Strand 4	F	77	82	anti-parallel
Strand 5	F	86	91	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	114	119	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	114	119	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	107	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6H7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6H7J