Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8L entry

There are 2 chains in PDB entry 6H8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 273SER 474
B
 VAL 273PHE 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6H8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
289 303Right-handed alpha
Helix 2
AA2
A
312 319Right-handed alpha
Helix 3
AA3
A
319 329Right-handed alpha
Helix 4
AA4
A
342 346Right-handed 310
Helix 5
AA5
A
347 367Right-handed alpha
Helix 6
AA6
A
375 379Right-handed 310
Helix 7
AA7
A
381 389Right-handed alpha
Helix 8
AA8
A
406 418Right-handed alpha
Helix 9
AA9
A
430 447Right-handed alpha
Helix 10
AB1
A
453 466Right-handed alpha
Helix 11
AB2
A
467 474Right-handed 310
Helix 12
AB3
B
289 304Right-handed alpha
Helix 13
AB4
B
312 319Right-handed alpha
Helix 14
AB5
B
319 329Right-handed alpha
Helix 15
AB6
B
342 346Right-handed 310
Helix 16
AB7
B
347 367Right-handed alpha
Helix 17
AB8
B
375 379Right-handed 310
Helix 18
AB9
B
381 389Right-handed alpha
Helix 19
AC1
B
406 418Right-handed alpha
Helix 20
AC2
B
430 447Right-handed alpha
Helix 21
AC3
B
453 466Right-handed alpha
Helix 22
AC4
B
467 473Right-handed 310
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There are 6 sheets in PDB entry 6H8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
308 311parallel
Strand 3
A
279 285parallel
Strand 4
A
423 427parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
308 311parallel
Strand 3
A
279 285parallel
Strand 4
A
450 451parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
391 392parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
308 311parallel
Strand 3
B
279 285parallel
Strand 4
B
423 427parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
308 311parallel
Strand 3
B
279 285parallel
Strand 4
B
450 451parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 373first strand
Strand 2
B
391 392parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il