Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8M entry

There are 2 chains in PDB entry 6H8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 383GLU 489
B
 GLY 383GLU 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6H8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
416 427Right-handed alpha
Helix 2
AA2
A
461 465Right-handed 310
Helix 3
AA3
A
476 480Right-handed 310
Helix 4
AA4
B
416 427Right-handed alpha
Helix 5
AA5
B
461 465Right-handed 310
Helix 6
AA6
B
476 480Right-handed 310
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There are 5 sheets in PDB entry 6H8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 390first strand
Strand 2
A
396 403anti-parallel
Strand 3
A
482 485anti-parallel
Strand 4
A
433 436anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 390first strand
Strand 2
A
396 403anti-parallel
Strand 3
A
406 410anti-parallel
Strand 4
A
448 450parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
466 467anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 390first strand
Strand 2
B
396 403anti-parallel
Strand 3
B
482 485anti-parallel
Strand 4
B
433 436anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 390first strand
Strand 2
B
396 403anti-parallel
Strand 3
B
406 410anti-parallel
Strand 4
B
448 450parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il