Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8N entry

There are 2 chains in PDB entry 6H8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 248SER 449
B
 VAL 248PHE 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6H8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
264 279Right-handed alpha
Helix 2
AA2
A
287 294Right-handed alpha
Helix 3
AA3
A
294 304Right-handed alpha
Helix 4
AA4
A
317 321Right-handed 310
Helix 5
AA5
A
322 342Right-handed alpha
Helix 6
AA6
A
350 354Right-handed 310
Helix 7
AA7
A
356 364Right-handed alpha
Helix 8
AA8
A
381 393Right-handed alpha
Helix 9
AA9
A
405 422Right-handed alpha
Helix 10
AB1
A
428 441Right-handed alpha
Helix 11
AB2
A
442 448Right-handed 310
Helix 12
AB3
B
264 278Right-handed alpha
Helix 13
AB4
B
287 294Right-handed alpha
Helix 14
AB5
B
294 304Right-handed alpha
Helix 15
AB6
B
317 321Right-handed 310
Helix 16
AB7
B
322 342Right-handed alpha
Helix 17
AB8
B
350 354Right-handed 310
Helix 18
AB9
B
356 364Right-handed alpha
Helix 19
AC1
B
381 393Right-handed alpha
Helix 20
AC2
B
405 422Right-handed alpha
Helix 21
AC3
B
428 441Right-handed alpha
Helix 22
AC4
B
442 448Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6H8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
283 286parallel
Strand 3
A
254 260parallel
Strand 4
A
398 402parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 310first strand
Strand 2
A
283 286parallel
Strand 3
A
254 260parallel
Strand 4
A
425 426parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
366 367parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 310first strand
Strand 2
B
283 286parallel
Strand 3
B
254 260parallel
Strand 4
B
398 402parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 310first strand
Strand 2
B
283 286parallel
Strand 3
B
254 260parallel
Strand 4
B
425 426parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
366 367parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il