Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8S entry

There is 1 chain in PDB entry 6H8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 249SER 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6H8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 257Right-handed alpha
Helix 2
AA2
A
262 271Right-handed alpha
Helix 3
AA3
A
272 283Right-handed alpha
Helix 4
AA4
A
289 293Right-handed 310
Helix 5
AA5
A
294 298Right-handed 310
Helix 6
AA6
A
310 314Right-handed 310
Helix 7
AA7
A
337 341Right-handed 310
Helix 8
AA8
A
352 354Right-handed 310
Helix 9
AA9
A
355 367Right-handed alpha
Helix 10
AB1
A
376 380Right-handed 310
Helix 11
AB2
A
440 442Right-handed 310
Helix 12
AB3
A
443 460Right-handed alpha
Helix 13
AB4
A
476 496Right-handed alpha
Helix 14
AB5
A
499 511Right-handed alpha
Helix 15
AB6
A
517 537Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6H8S.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
345 348anti-parallel
Strand 3
A
468 471parallel
Strand 4
A
370 374parallel
Strand 5
A
423 432parallel
Strand 6
A
411 420anti-parallel
Strand 7
A
398 407anti-parallel
Strand 8
A
392 395anti-parallel
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