Analysis of interatomic Contacts of Structural Units in PDB entry:
6H8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H8T entry

There are 2 chains in PDB entry 6H8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1ASN 212
J
 ILE 1ASN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6H8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 43Right-handed alpha
Helix 2
AA2
A
49 57Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
96 101Right-handed 310
Helix 6
AA6
A
117 128Right-handed alpha
Helix 7
AA7
A
138 144Right-handed alpha
Helix 8
AA8
A
198 202Right-handed 310
Helix 9
AA9
J
8 11Right-handed 310
Helix 10
AB1
J
24 43Right-handed alpha
Helix 11
AB2
J
49 57Right-handed alpha
Helix 12
AB3
J
61 65Right-handed 310
Helix 13
AB4
J
67 78Right-handed alpha
Helix 14
AB5
J
96 101Right-handed 310
Helix 15
AB6
J
117 128Right-handed alpha
Helix 16
AB7
J
138 144Right-handed alpha
Helix 17
AB8
J
198 202Right-handed 310
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There are 6 sheets in PDB entry 6H8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
130 134anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
186 190anti-parallel
Strand 5
A
148 149parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
207 210anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 6first strand
Strand 2
J
159 167anti-parallel
Strand 3
J
130 134anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 6first strand
Strand 2
J
159 167anti-parallel
Strand 3
J
170 174anti-parallel
Strand 4
J
186 190anti-parallel
Strand 5
J
148 149parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
109 113first strand
Strand 2
J
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il