Analysis of interatomic Contacts of Structural Units in PDB entry:
6H9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H9H entry

There are 4 chains in PDB entry 6H9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 2HIS 251
A
 GLY 2HIS 251
D
 U -2 G 21
E
 C -3 G 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6H9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 27Right-handed alpha
Helix 2
AA2
B
32 37Right-handed 310
Helix 3
AA3
B
52 64Right-handed alpha
Helix 4
AA4
B
71 77Right-handed alpha
Helix 5
AA5
B
102 122Right-handed alpha
Helix 6
AA6
B
161 181Right-handed alpha
Helix 7
AA7
B
187 192Right-handed alpha
Helix 8
AA8
B
239 243Right-handed 310
Helix 9
AA9
A
18 27Right-handed alpha
Helix 10
AB1
A
32 37Right-handed 310
Helix 11
AB2
A
54 61Right-handed alpha
Helix 12
AB3
A
71 77Right-handed alpha
Helix 13
AB4
A
102 122Right-handed alpha
Helix 14
AB5
A
161 181Right-handed alpha
Helix 15
AB6
A
187 192Right-handed alpha
Helix 16
AB7
A
239 243Right-handed 310
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There are 4 sheets in PDB entry 6H9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
92 98anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
126 133anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 208first strand
Strand 2
B
211 231anti-parallel
Strand 3
B
135 152anti-parallel
Strand 4
B
246 249anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
92 98anti-parallel
Strand 3
A
3 10anti-parallel
Strand 4
A
126 133anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 208first strand
Strand 2
A
211 231anti-parallel
Strand 3
A
135 152anti-parallel
Strand 4
A
246 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il