Analysis of interatomic Contacts of Structural Units in PDB entry:
6H9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H9O entry

There are 6 chains in PDB entry 6H9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58PRO 260
B
 GLN 64SER 76
B
 THR 78LEU 87
C
 SER 58PRO 260
D
 GLN 64SER 76
D
 THR 78LEU 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6H9O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 81Right-handed alpha
Helix 2
AA2
A
91 103Right-handed alpha
Helix 3
AA3
A
148 152Right-handed 310
Helix 4
AA4
A
166 183Right-handed alpha
Helix 5
AA5
A
215 237Right-handed alpha
Helix 6
AA6
B
65 74Right-handed alpha
Helix 7
AA7
C
70 80Right-handed alpha
Helix 8
AA8
C
91 103Right-handed alpha
Helix 9
AA9
C
148 153Right-handed alpha
Helix 10
AB1
C
166 183Right-handed alpha
Helix 11
AB2
C
215 237Right-handed alpha
Helix 12
AB3
D
65 75Right-handed alpha
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There are 4 sheets in PDB entry 6H9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
118 125parallel
Strand 3
A
106 114anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
128 132anti-parallel
Strand 4
A
159 161parallel
Strand 5
A
188 193parallel
Strand 6
A
199 203anti-parallel
Strand 7
A
208 212anti-parallel
Strand 8
A
239 245parallel
Strand 9
A
251 258anti-parallel
Strand 10
B
82 86anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
118 125parallel
Strand 3
C
106 114anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 145first strand
Strand 2
C
136 139anti-parallel
Strand 3
C
128 132anti-parallel
Strand 4
C
159 161parallel
Strand 5
C
188 193parallel
Strand 6
C
199 203anti-parallel
Strand 7
C
208 212anti-parallel
Strand 8
C
240 245parallel
Strand 9
C
251 257anti-parallel
Strand 10
D
82 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il