Analysis of interatomic Contacts of Structural Units in PDB entry:
6H9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6H9S entry

There are 2 chains in PDB entry 6H9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 305
B
 MET 1LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6H9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
34 50Right-handed alpha
Helix 3
AA3
A
61 66Right-handed 310
Helix 4
AA4
A
85 107Right-handed alpha
Helix 5
AA5
A
118 131Right-handed alpha
Helix 6
AA6
A
133 135Right-handed 310
Helix 7
AA7
A
142 158Right-handed alpha
Helix 8
AA8
A
160 162Right-handed 310
Helix 9
AA9
A
180 182Right-handed 310
Helix 10
AB1
A
191 193Right-handed 310
Helix 11
AB2
A
207 226Right-handed alpha
Helix 12
AB3
A
229 245Right-handed alpha
Helix 13
AB4
A
282 303Right-handed alpha
Helix 14
AB5
B
9 23Right-handed alpha
Helix 15
AB6
B
34 50Right-handed alpha
Helix 16
AB7
B
61 66Right-handed 310
Helix 17
AB8
B
84 107Right-handed alpha
Helix 18
AB9
B
118 131Right-handed alpha
Helix 19
AC1
B
133 135Right-handed 310
Helix 20
AC2
B
142 158Right-handed alpha
Helix 21
AC3
B
160 162Right-handed 310
Helix 22
AC4
B
180 183Right-handed 310
Helix 23
AC5
B
189 194Right-handed alpha
Helix 24
AC6
B
207 226Right-handed alpha
Helix 25
AC7
B
229 245Right-handed alpha
Helix 26
AC8
B
282 304Right-handed alpha
Helix 27
AC9
B
305 307Right-handed 310
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There are 10 sheets in PDB entry 6H9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
27 31parallel
Strand 3
A
2 6parallel
Strand 4
A
70 73parallel
Strand 5
A
111 114parallel
Strand 6
A
137 139parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
184 185anti-parallel
Strand 3
A
188 189anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
177 178anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
272 276anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
260 263anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
27 31parallel
Strand 3
B
2 6parallel
Strand 4
B
70 73parallel
Strand 5
B
111 114parallel
Strand 6
B
137 139parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
177 178anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
266 269anti-parallel
Strand 3
B
272 276anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il