Analysis of interatomic Contacts of Structural Units in PDB entry:
6HA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HA5 entry

There are 2 chains in PDB entry 6HA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 228
B
 GLY 2ASN 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6HA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
47 49Right-handed 310
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
105 108Right-handed 310
Helix 6
AA6
A
130 137Right-handed alpha
Helix 7
AA7
A
197 199Right-handed 310
Helix 8
AA8
B
21 25Right-handed 310
Helix 9
AA9
B
45 49Right-handed 310
Helix 10
AB1
B
52 57Right-handed alpha
Helix 11
AB2
B
105 108Right-handed 310
Helix 12
AB3
B
130 137Right-handed alpha
Helix 13
AB4
B
197 199Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6HA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
4 9anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
140 144anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
173 184anti-parallel
Strand 3
A
67 70parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
173 184anti-parallel
Strand 3
A
152 162anti-parallel
Strand 4
A
90 96anti-parallel
Strand 5
A
110 117anti-parallel
Strand 6
A
194 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
4 9anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
140 144anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
173 184parallel
Strand 3
B
152 162anti-parallel
Strand 4
B
90 96anti-parallel
Strand 5
B
110 117anti-parallel
Strand 6
B
194 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
128 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il