Analysis of interatomic Contacts of Structural Units in PDB entry:
6HAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HAF entry

There are 2 chains in PDB entry 6HAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9ASP 593
B
 THR 9ASP 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 6HAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
34 36Right-handed 310
Helix 3
AA3
A
37 47Right-handed alpha
Helix 4
AA4
A
58 74Right-handed alpha
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
90 100Right-handed alpha
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
145 161Right-handed alpha
Helix 9
AA9
A
171 174Right-handed 310
Helix 10
AB1
A
185 189Right-handed 310
Helix 11
AB2
A
198 212Right-handed alpha
Helix 12
AB3
A
221 224Right-handed 310
Helix 13
AB4
A
226 238Right-handed alpha
Helix 14
AB5
A
245 248Right-handed 310
Helix 15
AB6
A
267 277Right-handed alpha
Helix 16
AB7
A
308 312Right-handed 310
Helix 17
AB8
A
325 336Right-handed alpha
Helix 18
AB9
A
343 365Right-handed alpha
Helix 19
AC1
A
372 384Right-handed alpha
Helix 20
AC2
A
395 405Right-handed alpha
Helix 21
AC3
A
424 436Right-handed alpha
Helix 22
AC4
A
447 454Right-handed alpha
Helix 23
AC5
A
456 463Right-handed alpha
Helix 24
AC6
A
477 488Right-handed alpha
Helix 25
AC7
A
501 509Right-handed alpha
Helix 26
AC8
A
518 520Right-handed 310
Helix 27
AC9
A
521 533Right-handed alpha
Helix 28
AD1
A
563 575Right-handed alpha
Helix 29
AD2
A
581 589Right-handed alpha
Helix 30
AD3
B
13 24Right-handed alpha
Helix 31
AD4
B
34 36Right-handed 310
Helix 32
AD5
B
37 46Right-handed alpha
Helix 33
AD6
B
58 74Right-handed alpha
Helix 34
AD7
B
84 89Right-handed alpha
Helix 35
AD8
B
90 100Right-handed alpha
Helix 36
AD9
B
126 131Right-handed 310
Helix 37
AE1
B
145 161Right-handed alpha
Helix 38
AE2
B
171 174Right-handed 310
Helix 39
AE3
B
185 189Right-handed 310
Helix 40
AE4
B
198 212Right-handed alpha
Helix 41
AE5
B
221 225Right-handed 310
Helix 42
AE6
B
226 238Right-handed alpha
Helix 43
AE7
B
245 248Right-handed 310
Helix 44
AE8
B
267 277Right-handed alpha
Helix 45
AE9
B
308 312Right-handed 310
Helix 46
AF1
B
325 335Right-handed alpha
Helix 47
AF2
B
343 365Right-handed alpha
Helix 48
AF3
B
372 384Right-handed alpha
Helix 49
AF4
B
395 405Right-handed alpha
Helix 50
AF5
B
424 436Right-handed alpha
Helix 51
AF6
B
447 454Right-handed alpha
Helix 52
AF7
B
456 463Right-handed alpha
Helix 53
AF8
B
477 488Right-handed alpha
Helix 54
AF9
B
501 509Right-handed alpha
Helix 55
AG1
B
518 520Right-handed 310
Helix 56
AG2
B
521 533Right-handed alpha
Helix 57
AG3
B
563 574Right-handed alpha
Helix 58
AG4
B
581 589Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6HAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
176 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
52 55parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
104 110parallel
Strand 3
A
163 169parallel
Strand 4
A
136 139parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
215 219parallel
Strand 3
A
279 283parallel
Strand 4
A
301 306parallel
Strand 5
A
320 323parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
389 392parallel
Strand 3
A
441 446parallel
Strand 4
A
468 473parallel
Strand 5
A
538 543parallel
Strand 6
A
512 516parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
176 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
52 55parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
104 110parallel
Strand 3
B
163 169parallel
Strand 4
B
136 139parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
215 219parallel
Strand 3
B
279 283parallel
Strand 4
B
301 306parallel
Strand 5
B
320 323parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
389 392parallel
Strand 3
B
441 446parallel
Strand 4
B
468 473parallel
Strand 5
B
538 543parallel
Strand 6
B
512 516parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il