Analysis of interatomic Contacts of Structural Units in PDB entry:
6HBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HBH entry

There are 3 chains in PDB entry 6HBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 43ASP 275
B
 VAL 13ALA 257
C
 GLY 1ALA 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6HBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 63Right-handed alpha
Helix 2
AA2
A
95 103Right-handed alpha
Helix 3
AA3
A
155 159Right-handed 310
Helix 4
AA4
B
35 37Right-handed 310
Helix 5
AA5
B
83 87Right-handed 310
Helix 6
AA6
B
89 99Right-handed alpha
Helix 7
AA7
C
43 48Right-handed alpha
Helix 8
AA8
C
99 105Right-handed alpha
Helix 9
AA9
C
145 151Right-handed alpha
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There are 9 sheets in PDB entry 6HBH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
241 243anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
112 119anti-parallel
Strand 3
A
229 235anti-parallel
Strand 4
A
66 73anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 142first strand
Strand 2
A
213 218anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
241 245anti-parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
238 240anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
218 224anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
186 190anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
209 217anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
164 166anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
111 113anti-parallel
Strand 3
C
221 223anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 158first strand
Strand 2
C
130 136anti-parallel
Strand 3
C
190 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il