Analysis of interatomic Contacts of Structural Units in PDB entry:
6HBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HBJ entry

There are 3 chains in PDB entry 6HBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 52THR 274
B
 VAL 13SER 258
C
 GLY 1ALA 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6HBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 56Right-handed 310
Helix 2
AA2
A
57 63Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
95 103Right-handed alpha
Helix 5
AA5
A
154 159Right-handed 310
Helix 6
AA6
B
35 37Right-handed 310
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
89 99Right-handed alpha
Helix 9
AA9
C
43 48Right-handed alpha
Helix 10
AB1
C
64 68Right-handed 310
Helix 11
AB2
C
99 106Right-handed alpha
Helix 12
AB3
C
145 151Right-handed alpha
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There are 11 sheets in PDB entry 6HBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 74first strand
Strand 2
A
228 245anti-parallel
Strand 3
A
105 118anti-parallel
Strand 4
A
187 188anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
105 118anti-parallel
Strand 3
A
228 245anti-parallel
Strand 4
C
39 40anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
213 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
21 24anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
196 200parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
238 245anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
196 200parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
238 245anti-parallel
Strand 5
B
69 71anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
218 229anti-parallel
Strand 4
B
119 125anti-parallel
Strand 5
B
186 190anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
250 251anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 217anti-parallel
Strand 3
C
111 121anti-parallel
Strand 4
C
164 173anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
209 217anti-parallel
Strand 3
C
111 121anti-parallel
Strand 4
C
222 223anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 87first strand
Strand 2
C
190 200anti-parallel
Strand 3
C
128 136anti-parallel
Strand 4
C
153 158anti-parallel
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