Analysis of interatomic Contacts of Structural Units in PDB entry:
6HBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HBU entry

There are 2 chains in PDB entry 6HBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34TYR 654
B
 GLY 34TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 6HBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
135 148Right-handed alpha
Helix 3
AA3
A
153 169Right-handed alpha
Helix 4
AA4
A
187 199Right-handed alpha
Helix 5
AA5
A
217 233Right-handed alpha
Helix 6
AA6
A
246 251Right-handed alpha
Helix 7
AA7
A
273 278Right-handed alpha
Helix 8
AA8
A
289 298Right-handed alpha
Helix 9
AA9
A
302 308Right-handed alpha
Helix 10
AB1
A
327 338Right-handed alpha
Helix 11
AB2
A
339 353Right-handed alpha
Helix 12
AB3
A
372 391Right-handed alpha
Helix 13
AB4
A
392 413Right-handed alpha
Helix 14
AB5
A
422 440Right-handed alpha
Helix 15
AB6
A
441 448Right-handed 310
Helix 16
AB7
A
451 461Right-handed alpha
Helix 17
AB8
A
465 479Right-handed alpha
Helix 18
AB9
A
483 493Right-handed alpha
Helix 19
AC1
A
503 529Right-handed alpha
Helix 20
AC2
A
534 551Right-handed alpha
Helix 21
AC3
A
567 571Right-handed 310
Helix 22
AC4
A
572 586Right-handed alpha
Helix 23
AC5
A
609 618Right-handed alpha
Helix 24
AC6
A
623 650Right-handed alpha
Helix 25
AC7
B
85 94Right-handed alpha
Helix 26
AC8
B
135 148Right-handed alpha
Helix 27
AC9
B
153 169Right-handed alpha
Helix 28
AD1
B
187 199Right-handed alpha
Helix 29
AD2
B
217 233Right-handed alpha
Helix 30
AD3
B
246 251Right-handed alpha
Helix 31
AD4
B
273 278Right-handed alpha
Helix 32
AD5
B
289 298Right-handed alpha
Helix 33
AD6
B
302 308Right-handed alpha
Helix 34
AD7
B
327 338Right-handed alpha
Helix 35
AD8
B
339 353Right-handed alpha
Helix 36
AD9
B
372 391Right-handed alpha
Helix 37
AE1
B
392 413Right-handed alpha
Helix 38
AE2
B
422 440Right-handed alpha
Helix 39
AE3
B
441 448Right-handed 310
Helix 40
AE4
B
451 461Right-handed alpha
Helix 41
AE5
B
465 479Right-handed alpha
Helix 42
AE6
B
483 493Right-handed alpha
Helix 43
AE7
B
503 529Right-handed alpha
Helix 44
AE8
B
534 551Right-handed alpha
Helix 45
AE9
B
567 571Right-handed 310
Helix 46
AF1
B
572 586Right-handed alpha
Helix 47
AF2
B
609 618Right-handed alpha
Helix 48
AF3
B
623 650Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6HBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
206 210parallel
Strand 3
A
237 241parallel
Strand 4
A
75 79parallel
Strand 5
A
255 260parallel
Strand 6
A
263 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
206 210parallel
Strand 3
B
237 241parallel
Strand 4
B
75 79parallel
Strand 5
B
255 260parallel
Strand 6
B
263 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il