Analysis of interatomic Contacts of Structural Units in PDB entry:
6HBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HBV entry

There are 2 chains in PDB entry 6HBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4MET 417
B
 GLY 4PRO 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6HBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
59 63Right-handed 310
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
93 106Right-handed alpha
Helix 6
AA6
A
117 134Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
174 185Right-handed alpha
Helix 9
AA9
A
209 224Right-handed alpha
Helix 10
AB1
A
244 248Right-handed 310
Helix 11
AB2
A
275 282Right-handed alpha
Helix 12
AB3
A
291 308Right-handed alpha
Helix 13
AB4
A
309 333Right-handed alpha
Helix 14
AB5
A
355 368Right-handed alpha
Helix 15
AB6
A
385 406Right-handed alpha
Helix 16
AB7
A
407 410Right-handed 310
Helix 17
AB8
B
5 18Right-handed alpha
Helix 18
AB9
B
19 22Right-handed 310
Helix 19
AC1
B
23 27Right-handed 310
Helix 20
AC2
B
59 63Right-handed 310
Helix 21
AC3
B
71 83Right-handed alpha
Helix 22
AC4
B
93 106Right-handed alpha
Helix 23
AC5
B
117 134Right-handed alpha
Helix 24
AC6
B
160 164Right-handed 310
Helix 25
AC7
B
174 185Right-handed alpha
Helix 26
AC8
B
209 224Right-handed alpha
Helix 27
AC9
B
244 248Right-handed 310
Helix 28
AD1
B
275 282Right-handed alpha
Helix 29
AD2
B
291 308Right-handed alpha
Helix 30
AD3
B
309 332Right-handed alpha
Helix 31
AD4
B
355 368Right-handed alpha
Helix 32
AD5
B
385 406Right-handed alpha
Helix 33
AD6
B
407 410Right-handed 310
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There are 8 sheets in PDB entry 6HBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
370 371parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
253 256anti-parallel
Strand 4
A
226 230parallel
Strand 5
A
189 194parallel
Strand 6
A
137 141parallel
Strand 7
A
167 170parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
206 207anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
346 349anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
370 371parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
253 256anti-parallel
Strand 4
B
226 230parallel
Strand 5
B
189 194parallel
Strand 6
B
137 141parallel
Strand 7
B
167 170parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
206 207anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 339first strand
Strand 2
B
346 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il