Analysis of interatomic Contacts of Structural Units in PDB entry:
6HC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HC6 entry

There are 3 chains in PDB entry 6HC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 39LYS 455
B
 ARG 39LYS 455
C
 ARG 39LYS 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 6HC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
66 83Right-handed alpha
Helix 3
AA3
A
136 140Right-handed 310
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
A
157 168Right-handed alpha
Helix 6
AA6
A
202 210Right-handed alpha
Helix 7
AA7
A
263 278Right-handed alpha
Helix 8
AA8
A
293 297Right-handed 310
Helix 9
AA9
A
298 307Right-handed alpha
Helix 10
AB1
A
309 315Right-handed alpha
Helix 11
AB2
A
345 359Right-handed alpha
Helix 12
AB3
A
372 379Right-handed alpha
Helix 13
AB4
A
406 410Right-handed 310
Helix 14
AB5
A
411 431Right-handed alpha
Helix 15
AB6
A
446 450Right-handed 310
Helix 16
AB7
B
44 57Right-handed alpha
Helix 17
AB8
B
66 83Right-handed alpha
Helix 18
AB9
B
136 140Right-handed 310
Helix 19
AC1
B
141 145Right-handed 310
Helix 20
AC2
B
157 168Right-handed alpha
Helix 21
AC3
B
202 210Right-handed alpha
Helix 22
AC4
B
263 278Right-handed alpha
Helix 23
AC5
B
293 297Right-handed 310
Helix 24
AC6
B
298 307Right-handed alpha
Helix 25
AC7
B
309 315Right-handed alpha
Helix 26
AC8
B
345 359Right-handed alpha
Helix 27
AC9
B
372 379Right-handed alpha
Helix 28
AD1
B
406 410Right-handed 310
Helix 29
AD2
B
411 431Right-handed alpha
Helix 30
AD3
B
446 450Right-handed 310
Helix 31
AD4
C
44 57Right-handed alpha
Helix 32
AD5
C
66 83Right-handed alpha
Helix 33
AD6
C
136 140Right-handed 310
Helix 34
AD7
C
141 145Right-handed 310
Helix 35
AD8
C
157 168Right-handed alpha
Helix 36
AD9
C
202 210Right-handed alpha
Helix 37
AE1
C
263 278Right-handed alpha
Helix 38
AE2
C
293 297Right-handed 310
Helix 39
AE3
C
298 307Right-handed alpha
Helix 40
AE4
C
309 315Right-handed alpha
Helix 41
AE5
C
345 359Right-handed alpha
Helix 42
AE6
C
372 379Right-handed alpha
Helix 43
AE7
C
406 410Right-handed 310
Helix 44
AE8
C
411 431Right-handed alpha
Helix 45
AE9
C
446 450Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6HC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 93first strand
Strand 2
A
226 234anti-parallel
Strand 3
A
285 291anti-parallel
Strand 4
A
244 250parallel
Strand 5
A
316 322parallel
Strand 6
A
382 389parallel
Strand 7
A
334 339anti-parallel
Strand 8
A
363 367parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
125 131anti-parallel
Strand 5
A
148 152parallel
Strand 6
A
172 176parallel
Strand 7
A
198 201parallel
Strand 8
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 93first strand
Strand 2
B
226 234anti-parallel
Strand 3
B
285 291anti-parallel
Strand 4
B
244 250parallel
Strand 5
B
316 322parallel
Strand 6
B
382 389parallel
Strand 7
B
334 339anti-parallel
Strand 8
B
363 367parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
214 222anti-parallel
Strand 4
B
125 131anti-parallel
Strand 5
B
148 152parallel
Strand 6
B
172 176parallel
Strand 7
B
198 201parallel
Strand 8
B
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 93first strand
Strand 2
C
226 234anti-parallel
Strand 3
C
285 291anti-parallel
Strand 4
C
244 250parallel
Strand 5
C
316 322parallel
Strand 6
C
382 389parallel
Strand 7
C
334 339anti-parallel
Strand 8
C
363 367parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
97 104anti-parallel
Strand 3
C
214 222anti-parallel
Strand 4
C
125 131anti-parallel
Strand 5
C
148 152parallel
Strand 6
C
172 176parallel
Strand 7
C
198 201parallel
Strand 8
C
112 113anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il