Analysis of interatomic Contacts of Structural Units in PDB entry:
6HCP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6HCP entry

There are 3 chains in PDB entry 6HCP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 33	PHE 703
B	ASP 33	PHE 703
C	ASP 33	PHE 703

There are 23 helices in PDB entry 6HCP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	49	Right-handed 310
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed alpha
Helix 5	AA5	A	109	112	Right-handed 310
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	142	147	Right-handed alpha
Helix 8	AA8	A	588	592	Right-handed 310
Helix 9	AA9	B	47	49	Right-handed 310
Helix 10	AB1	B	55	57	Right-handed 310
Helix 11	AB2	B	66	73	Right-handed alpha
Helix 12	AB3	B	77	82	Right-handed alpha
Helix 13	AB4	B	109	112	Right-handed 310
Helix 14	AB5	B	128	130	Right-handed 310
Helix 15	AB6	B	142	147	Right-handed alpha
Helix 16	AB7	B	588	592	Right-handed 310
Helix 17	AB8	C	47	49	Right-handed 310
Helix 18	AB9	C	55	57	Right-handed 310
Helix 19	AC1	C	66	73	Right-handed alpha
Helix 20	AC2	C	77	82	Right-handed alpha
Helix 21	AC3	C	109	112	Right-handed 310
Helix 22	AC4	C	142	147	Right-handed alpha
Helix 23	AC5	C	588	592	Right-handed 310

There are 15 sheets in PDB entry 6HCP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	51	53	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	156	162	anti-parallel

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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	190	first strand
Strand 2	A	170	178	anti-parallel
Strand 3	A	694	702	anti-parallel
Strand 4	A	662	671	anti-parallel
Strand 5	A	646	659	anti-parallel
Strand 6	A	619	630	anti-parallel
Strand 7	A	604	615	anti-parallel
Strand 8	A	572	587	anti-parallel
Strand 9	A	553	566	anti-parallel
Strand 10	A	521	534	anti-parallel
Strand 11	A	505	517	anti-parallel
Strand 12	A	475	486	anti-parallel
Strand 13	A	458	470	anti-parallel
Strand 14	A	433	448	anti-parallel
Strand 15	A	409	428	anti-parallel
Strand 16	A	358	378	anti-parallel
Strand 17	A	329	355	anti-parallel
Strand 18	A	299	322	anti-parallel
Strand 19	A	279	296	anti-parallel
Strand 20	A	235	249	anti-parallel
Strand 21	A	218	231	anti-parallel
Strand 22	A	199	211	anti-parallel
Strand 23	A	181	193	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	331	first strand
Strand 2	A	388	391	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	543	first strand
Strand 2	A	546	550	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	51	53	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	132	139	anti-parallel
Strand 3	B	156	162	anti-parallel

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There are 23 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	190	first strand
Strand 2	B	170	178	anti-parallel
Strand 3	B	694	702	anti-parallel
Strand 4	B	662	671	anti-parallel
Strand 5	B	646	659	anti-parallel
Strand 6	B	619	630	anti-parallel
Strand 7	B	604	615	anti-parallel
Strand 8	B	572	587	anti-parallel
Strand 9	B	553	566	anti-parallel
Strand 10	B	521	534	anti-parallel
Strand 11	B	505	517	anti-parallel
Strand 12	B	475	486	anti-parallel
Strand 13	B	458	470	anti-parallel
Strand 14	B	433	448	anti-parallel
Strand 15	B	409	428	anti-parallel
Strand 16	B	358	378	anti-parallel
Strand 17	B	329	355	anti-parallel
Strand 18	B	299	322	anti-parallel
Strand 19	B	279	296	anti-parallel
Strand 20	B	235	249	anti-parallel
Strand 21	B	218	231	anti-parallel
Strand 22	B	199	211	anti-parallel
Strand 23	B	181	193	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	331	first strand
Strand 2	B	388	391	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	543	first strand
Strand 2	B	546	550	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	51	53	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	156	162	anti-parallel

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There are 23 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	190	first strand
Strand 2	C	170	178	anti-parallel
Strand 3	C	694	702	anti-parallel
Strand 4	C	662	671	anti-parallel
Strand 5	C	646	659	anti-parallel
Strand 6	C	619	630	anti-parallel
Strand 7	C	604	615	anti-parallel
Strand 8	C	572	587	anti-parallel
Strand 9	C	553	566	anti-parallel
Strand 10	C	521	534	anti-parallel
Strand 11	C	505	517	anti-parallel
Strand 12	C	475	486	anti-parallel
Strand 13	C	458	472	anti-parallel
Strand 14	C	433	448	anti-parallel
Strand 15	C	409	428	anti-parallel
Strand 16	C	358	378	anti-parallel
Strand 17	C	329	355	anti-parallel
Strand 18	C	299	322	anti-parallel
Strand 19	C	279	296	anti-parallel
Strand 20	C	235	249	anti-parallel
Strand 21	C	218	231	anti-parallel
Strand 22	C	199	211	anti-parallel
Strand 23	C	181	193	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	388	391	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	543	first strand
Strand 2	C	546	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6HCP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6HCP