Analysis of interatomic Contacts of Structural Units in PDB entry:
6HCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6HCW entry

There are 2 chains in PDB entry 6HCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45ASN 545
B
 SER 45ASN 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6HCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 61Right-handed alpha
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
132 134Right-handed 310
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
140 147Right-handed alpha
Helix 6
AA6
A
188 192Right-handed 310
Helix 7
AA7
A
196 201Right-handed alpha
Helix 8
AA8
A
201 209Right-handed alpha
Helix 9
AA9
A
209 233Right-handed alpha
Helix 10
AB1
A
272 282Right-handed alpha
Helix 11
AB2
A
318 339Right-handed alpha
Helix 12
AB3
A
368 377Right-handed alpha
Helix 13
AB4
A
386 401Right-handed alpha
Helix 14
AB5
A
409 422Right-handed alpha
Helix 15
AB6
A
423 426Right-handed 310
Helix 16
AB7
A
436 440Right-handed 310
Helix 17
AB8
A
474 491Right-handed alpha
Helix 18
AB9
A
500 508Right-handed alpha
Helix 19
AC1
A
521 530Right-handed alpha
Helix 20
AC2
A
533 537Right-handed 310
Helix 21
AC3
B
46 61Right-handed alpha
Helix 22
AC4
B
75 84Right-handed alpha
Helix 23
AC5
B
132 134Right-handed 310
Helix 24
AC6
B
135 139Right-handed 310
Helix 25
AC7
B
140 147Right-handed alpha
Helix 26
AC8
B
196 201Right-handed alpha
Helix 27
AC9
B
201 209Right-handed alpha
Helix 28
AD1
B
209 233Right-handed alpha
Helix 29
AD2
B
272 282Right-handed alpha
Helix 30
AD3
B
318 339Right-handed alpha
Helix 31
AD4
B
368 377Right-handed alpha
Helix 32
AD5
B
386 401Right-handed alpha
Helix 33
AD6
B
409 422Right-handed alpha
Helix 34
AD7
B
423 426Right-handed 310
Helix 35
AD8
B
436 440Right-handed 310
Helix 36
AD9
B
474 491Right-handed alpha
Helix 37
AE1
B
500 508Right-handed alpha
Helix 38
AE2
B
521 530Right-handed alpha
Helix 39
AE3
B
533 537Right-handed 310
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There are 8 sheets in PDB entry 6HCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 110first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
168 179parallel
Strand 5
A
153 162anti-parallel
Strand 6
A
97 110anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
286 294parallel
Strand 3
A
306 315anti-parallel
Strand 4
A
514 520anti-parallel
Strand 5
A
463 470anti-parallel
Strand 6
A
455 460anti-parallel
Strand 7
A
430 433anti-parallel
Strand 8
A
364 367parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
264 268anti-parallel
Strand 3
A
256 259anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
355 358anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 110first strand
Strand 2
B
113 120anti-parallel
Strand 3
B
123 130anti-parallel
Strand 4
B
168 179parallel
Strand 5
B
153 162anti-parallel
Strand 6
B
97 110anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
286 294parallel
Strand 3
B
306 315anti-parallel
Strand 4
B
514 520anti-parallel
Strand 5
B
463 470anti-parallel
Strand 6
B
455 460anti-parallel
Strand 7
B
430 433anti-parallel
Strand 8
B
364 367parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
264 268anti-parallel
Strand 3
B
256 259anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 345first strand
Strand 2
B
355 358anti-parallel
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